spholmes
Statistics program developer since 1981: Fortran,JCL,Pascal,Dos,Basic,APL,unix,S,C,R,Java,... the road never ends.
StanfordCalifornia
Pinned Repositories
2021-12-02-Stanford
American-Gut
American Gut open-access data and IPython notebooks
bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
BiocWorkingGroups
Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.
F1000_workflow
GraphsTutorial
Tutorial on Graphs and Networks
MSMB_Lab
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
spholmes.github.io
Homepage documents,talks, videos, papers.
Workshop2019
Merge of workflow and dada2 new tutorial material for 2019 workshops: ASM, STAMPS
spholmes's Repositories
spholmes/F1000_workflow
spholmes/GraphsTutorial
Tutorial on Graphs and Networks
spholmes/Workshop2019
Merge of workflow and dada2 new tutorial material for 2019 workshops: ASM, STAMPS
spholmes/American-Gut
American Gut open-access data and IPython notebooks
spholmes/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
spholmes/MSMB_Lab
spholmes/spholmes.github.io
Homepage documents,talks, videos, papers.
spholmes/2021-12-02-Stanford
spholmes/bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
spholmes/BiocWorkingGroups
Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.
spholmes/Nuclei
Code for Multivariate Analyses of Nuclear Lamin Degradation
spholmes/R-ecology-lesson
pie
spholmes/R-ecology-lesson-1
ARCHIVED - Data Analysis and Visualization in R for Ecologists
spholmes/Workshop
Carpentries
spholmes/XICOR
R package for generalized correlation