Cannot import SerialED

[AEljarrat]

After a succesful installation, following the instructions in the tutorial, I get an ImportError when trying to import SerialED. It seems the error stems from routines in pyxem.utils.peakfinders2D being changes. Looking at the pyxem Issue tracker it seems this is a known issue. Nevertheless, since I am interested in trying your problematic code, I want to ask if there is any fix or workaround to this problem?
Many thanks!

PS. error trace:

from problematic import Indexer, Projector

from problematic import serialED

---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
<ipython-input-2-8a00391d9d08> in <module>()
      1 from problematic import Indexer, Projector
----> 2 from problematic import serialED

~/anaconda3/envs/pyxem/lib/python3.6/site-packages/problematic/serialED.py in <module>()
      2 import hyperspy.api as hs
      3 from hdf5_to_hyperspy import hdf5_to_hyperspy
----> 4 from pyxem.utils.peakfinders2D import find_peaks_regionprops
      5 from pyxem.utils.expt_utils import find_beam_position_blur
      6 import os, sys

ImportError: cannot import name 'find_peaks_regionprops'

[stefsmeets]

Hi @AEljarrat, thank you for the report. I just pushed a commit (0f9057a) from a branch that I was working on a few months ago that removes the pyxem dependency, and uses hyperspy directly instead. As I'm not actively working on the code at the moment, and pyxem is changing quite rapidly, perhaps this was a good time to do so. Could you check if it works for you?

[AEljarrat]

Yes, it works now! I upgraded my installation and I am now able to load serialD. Thanks a lot for the update.

[stefsmeets]

Good to know! Thanks for testing it out!