stschiff/msmc2

conda package for msmc2

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jayramr commented

Dear Team,

Do you have conda package available for this msmc2? if not, kindly let me know I will try to create as a conda package in bioconda.

Below is the install procedure i followed, please correct me

make --version
GNU Make 4.3
wget https://github.com/stschiff/msmc2/archive/refs/tags/v2.1.4.tar.gz
tar xvf v2.1.4.tar.gz
cd msmc2-2.1.4/
wget https://downloads.dlang.org/releases/2022/dmd_2.101.0-0_amd64.deb
sudo apt install -f ./dmd_2.101.0-0_amd64.deb

make
make
dmd -O /usr/local/lib/libgsl.a /usr/local/lib/libgslcblas.a -odbuild/test -ofbuild/release/msmc2 model/data.d model/gsl_matrix_vector.d model/propagation_core.d model/psmc_hmm.d model/psmc_model.d model/stateVec.d model/stateVecAllocator.d model/time_intervals.d model/transition_rate.d powell.d brent.d maximization_step.d expectation_step.d msmc2.d logger.d
/usr/bin/ld: cannot find /usr/local/lib/libgsl.a: No such file or directory
/usr/bin/ld: cannot find /usr/local/lib/libgslcblas.a: No such file or directory
collect2: error: ld returned 1 exit status
Error: linker exited with status 1
make: *** [Makefile:20: build/release/msmc2] Error 1 -->>

Please advise