sunqiangzai

Pinned Repositories

• CGRS

  We established a new prognostic signature, clinic and genetic risk score (CGRS), by integrating gene expression profiles with clinical characteristics. CGRS has been confirmed in four different cohorts for accurately predicting GC prognosis, and significantly stratified stage III GC patients into high and low risk groups with different survival time. Furthermore, an easy-to-use nomogram and web application based on CGRS were developed to facilitate its application in clinical practice.

  Language:R10

• ENCODE_miRNA_pipeline

  Language:Shell10

• fastp

  A FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)

  Language:C++10

• GeneFuse

  Gene fusion detection and visualization

  Language:C10

• maftools

  :cancer: Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

  Language:R1100

• MetDNA

  All the source code of MetDNA.

  Language:R10

• NeoPredPipe

  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.

  Language:Python10

• speedseq

  A flexible framework for rapid genome analysis and interpretation

  Language:C10

• SURVIV

  Survival Analysis of mRNA Isoform Variation

  Language:Python1100

sunqiangzai's Repositories