Adaptation: snapTool fragment files
rootze opened this issue · 0 comments
rootze commented
Due to the issues reported in #3, we suspected the error was due to the fragments' format. We are working with other researchers who have access to SnapTool output files to investigate the matter actively.
- Finding a way to reformat snapTool fragment files
Possible way of reformating fragment files to match cellranger atac count output: stuart-lab/signac#748 - Update the ArchR2Signac code to accept the reformatted SnapTool fragment files
- Update the ArchRtoSignac tutorial