szilvajuhos
while(*source) { *target = *source; source++; target++; }
Morgan Stanley BudapestFelsőörs
Pinned Repositories
adv-oop-in-r
Source code for 'Advanced Object-Oriented Programming in R' by Thomas Mailund
btb-scripts
Collection of ad-hoc scripts for BTB
hello-ngi-engine
A sample engine for SciLifeLab NGI pipeline
kshdeath
sarek.pathfindr
Scoring and ranking somatic and germline variations for cancer research
smallRef
Small human reference for tests
szilvajuhos.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
vcffuse
szilvajuhos's Repositories
szilvajuhos/btb-scripts
Collection of ad-hoc scripts for BTB
szilvajuhos/smallRef
Small human reference for tests
szilvajuhos/szilvajuhos.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
szilvajuhos/adv-oop-in-r
Source code for 'Advanced Object-Oriented Programming in R' by Thomas Mailund
szilvajuhos/kshdeath
szilvajuhos/sarek.pathfindr
Scoring and ranking somatic and germline variations for cancer research
szilvajuhos/vcffuse
szilvajuhos/aliceflow
NextFlow framework to streamline the Genalice variant call pipeline
szilvajuhos/Bendola
Creating and visualising allele phase graphs form HLA genotypes
szilvajuhos/bioconda-recipes
Conda recipes for the bioconda channel.
szilvajuhos/CAW-containers
Containers for CAW
szilvajuhos/configs
Config files used to define parameters specific to compute environments at different Institutions.
szilvajuhos/genmod
Annotate models of genetic inheritance patterns in variant files (vcf files)
szilvajuhos/Gens
A web-based interactive tool to visualize genomic copy number profiles from WGS data
szilvajuhos/Hapl-o-Mat
A software for haplotype inference
szilvajuhos/icing
An attempt to make HLA typing from OxfordNanopore reads (MinION platform)
szilvajuhos/NGB
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
szilvajuhos/NGI-smRNAseq
Nextflow Small RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
szilvajuhos/ngi_pipeline
Code driving the production pipeline at SciLifeLab
szilvajuhos/pairFASTQ
Pairing Illumina FASTQ files
szilvajuhos/pathfindr
R code for variant prioritization, intended for use with Sarek
szilvajuhos/ponpom
Effect of PON (Panel Of Normals) on somatic variant calls
szilvajuhos/primeula
Toy project to visualise prime numbers in a fancy way
szilvajuhos/rnafusion
RNA-seq analysis pipeline for detection gene-fusions
szilvajuhos/rxdock
RxDock is a fork of rDock. Note: the latest code is under development. Please do git checkout c0c3a3a after clone if you want patched rDock. [IMPORTANT NOTE: pull requests should be posted on GitLab, this is a read-only source code mirror]
szilvajuhos/sarek
An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing
szilvajuhos/scout
VCF visualization interface
szilvajuhos/simpanel
Simulating a tumour gene panel for NGS
szilvajuhos/stellarium-skycultures
Sky Cultures for Stellarium
szilvajuhos/VCF_Comparisons
Compare two VCF files and generate individuals stats and comparisons for snp and indels