object `exp_track_nm` not found in `shaman_score_hic_track()`
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jiangpuxuan commented
I finished gtrack.2d.import()
, gdb.reload()
and shaman_shuffle_hic_track()
and everything is OK.
However, there is something wrong in shaman_score_hic_track()
:
track_name <- "grnsmile_hic_obs"
score_track_name <- "grnsmile_hic_score_new"
exp_track_name<-'grnsmile_hic_obs_shuffle'
shaman_score_hic_track(
track_db=groot,
work_dir=tempdir(),
score_track_nm=score_track_name,
obs_track_nms=track_name,
exp_track_nm=exp_track_name,
max_jobs= 3)
The error is:
This error may indicate that something in the output of shaman_shuffle_hic_track()
is missed.
I then checked /db/genome3d/hg38/tracks/
, and that directory did have shuffle_hic_track
in it, but the shaman_score_hic_track()
could not find it.
How could I fix this?
Thank you for your help!
jiangpuxuan commented
I ran gdb.reload()
, and it seemed to be solved.
Let it slide...
jiangpuxuan commented