taotao0501's Stars
gatk-workflows/five-dollar-genome-analysis-pipeline
Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
bjtrost/TCAG-WGS-CNV-workflow
Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods
lh3/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
theislab/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
jlanga/smsk_gatk_germline
Snakemake workflow to perform GATK's best practices for Germline SNP & Indel Discovery in Whole Genome and Exome Sequence
gao-lab/Guideline-for-Computational-Biology-and-Bioinformatics
Hoohm/dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
databio/pepatac
A modular, containerized pipeline for ATAC-seq data processing
ekg/alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
marc-jones/brassica-napus-bulk-segregant
Scripts used to perform bulk segregant analysis in Brassica napus
dafenqi/BSRPipline
Analysis Pipline Of Bulked Segregant RNA-Seq
jueseph/Tutorial-BSA-Python
Tutorial for bulk segregant analysis using Python
bmansfeld/QTLseqr
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
derekeder/csv-to-html-table
:arrow_down_small: Display any CSV (comma separated values) file as a searchable, filterable, pretty HTML table
YuLab-SMU/ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization
jianhong/trackViewer.documentation
documentation for trackViewer
daler/metaseq
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
ElementoLab/ChIPseeqer
A comprehensive framework for the analysis of ChIP-seq data
asntech/UniBind
UniBind is a comprehensive database of transcription factor binding sites predicted through uniform processing of thousands of ChIP-seq datasets
BeyondTheProof/chip_db
A lightweight database to deal with many ChIP-seq or similar whole-genome tracks. Allows for constant-time access of any position along the genome.
apfejes/epigenetics-software
This repository contains code for epigenetic analysis, including a chip-seq/chip-chip tool, a database and a web server.
chgibb/PHAT
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
swirldev/swirl_courses
:mortar_board: A collection of interactive courses for the swirl R package.
MayurDivate/GUAVA
GUAVA : A GUI tool for the Analysis and Visualization of ATAC-seq data
LauraPS1/TFEA.ChIP_downloads
TFEA.ChIP is an R package in developement. Its purpose is to analyze transcription factor enrichment in a set of differentially expressed genes.
bioinformatics-core-shared-training/cruk-summer-school-2019
Summer School 2019 - Functional Genomics
taotao0501/ngs_pipeline_by_snakemake
writing ngs_pipeline scripts by snakemake
ColorlibHQ/AdminLTE
AdminLTE - Free admin dashboard template based on Bootstrap 5
rodrigovive/Dashboard-php-bootstrap-and-ajax
uc-bd2k/GREIN
GREIN : GEO RNA-seq Experiments Interactive Navigator