Pinned Repositories
ais-derivatives-plugin
ais-pipelines-workshop
Materials for the AIS pipelines workshop at the National Imaging Facility Annual General Meeting
arcana
Archive-centric NeuroImaging processing architecture based on NiPype
arcana-tutorial
banana
A collection of Arcana Study classes that implement neuroimaging analysis pipelines
bhg-event-materials
Brainhack Global Event Materials
Diophantine
A Python implementation of an algorithm for solving systems of diophantine equations
FouTS
A toolset written in C++ for characterising white matter tracts from dMRI using Fourier Tract Sampling (FouTS)
neurotune
tclose's Repositories
tclose/banana
A collection of Arcana Study classes that implement neuroimaging analysis pipelines
tclose/FouTS
A toolset written in C++ for characterising white matter tracts from dMRI using Fourier Tract Sampling (FouTS)
tclose/arcana-tutorial
tclose/CompareNest
A Mock NEST environment for debugging of generated model code
tclose/dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
tclose/elsapy
A Python module for use with Elsevier's APIs: Scopus, ScienceDirect, others.
tclose/fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
tclose/FriendENGINE
FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback processing package, already available on the NITRC repository
tclose/gsl_debug
A debug version of the homebrew gsl formula
tclose/homebrew-pype9
A Homebrew Tap for the Pype9 application
tclose/homebrew-science
:beer::microscope: Scientific formulae for the Homebrew package manager
tclose/mbi-subjects-db
A collection of Flask apps used at MBI
tclose/neuralensemble-docker
Docker images for neuroscience
tclose/nineml-catalog
A collection of 9ML example component classes
tclose/nineml-python
A Python library for reading, parsing, validating and writing the 9ML (http://nineml.net) object model
tclose/nineml-spec
Specification of the NineML model description language.
tclose/NineML_demo_2016
tclose/nipy
Neuroimaging in Python FMRI analysis package
tclose/ocnc
tclose/old_nineml_repo
tclose/Porcupine
tclose/pybids
Python package to access BIDS datasets
tclose/pydstool
PyDSTool main development repo
tclose/PyNN
A Python package for simulator-independent specification of neuronal network models.
tclose/pype9
Python pipelines to simulate and manipulate neuronal models, and networks thereof, described in NineML (http://nineml.net)
tclose/python-neo
Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
tclose/pyxnat
XNAT in Python
tclose/SashaShieldsIoDebugging
Repository for debugging shields.io badges
tclose/sympy
A computer algebra system written in pure Python
tclose/xnatutils
A collection of CLI scripts for conveniently up/downloading and listing data on/from XNAT repositories.