UMAP and TSNE for Embedding Projector Doesn't Load
ESunInTheSky opened this issue · 1 comments
Environment information (required)
Please run diagnose_tensorboard.py (link below) in the same
environment from which you normally run TensorFlow/TensorBoard, and
paste the output here:
Diagnostics
'
Diagnostics output
--- check: autoidentify
INFO: diagnose_tensorboard.py version c6ca9f1d004e2a1bc7c160abc43be229b82cad7e
--- check: general
INFO: sys.version_info: sys.version_info(major=3, minor=12, micro=2, releaselevel='final', serial=0)
INFO: os.name: posix
INFO: os.uname(): posix.uname_result(sysname='Linux', nodename='ip-172-31-31-15.us-east-2.compute.internal', release='6.1.91-99.172.amzn2023.x86_64', version='#1 SMP PREEMPT_DYNAMIC Tue May 21 16:55:08 UTC 2024', machine='x86_64')
INFO: sys.getwindowsversion(): N/A
--- check: package_management
INFO: has conda-meta: True
INFO: $VIRTUAL_ENV: None
--- check: installed_packages
WARNING: no installation among: ['tb-nightly', 'tensorboard', 'tensorflow-tensorboard']
WARNING: no installation among: ['tensorflow', 'tensorflow-gpu', 'tf-nightly', 'tf-nightly-2.0-preview', 'tf-nightly-gpu', 'tf-nightly-gpu-2.0-preview']
WARNING: no installation among: ['tensorflow-estimator', 'tensorflow-estimator-2.0-preview', 'tf-estimator-nightly']
--- check: tensorboard_python_version
Traceback (most recent call last):
File "/home/ec2-user/platform/tensorboard-server/tensorboard/tensorboard/tools/diagnose_tensorboard.py", line 511, in main
suggestions.extend(check())
^^^^^^^
File "/home/ec2-user/platform/tensorboard-server/tensorboard/tensorboard/tools/diagnose_tensorboard.py", line 81, in wrapper
result = fn()
^^^^
File "/home/ec2-user/platform/tensorboard-server/tensorboard/tensorboard/tools/diagnose_tensorboard.py", line 260, in tensorboard_python_version
from tensorboard import version
ModuleNotFoundError: No module named 'tensorboard'
--- check: tensorflow_python_version
Traceback (most recent call last):
File "/home/ec2-user/platform/tensorboard-server/tensorboard/tensorboard/tools/diagnose_tensorboard.py", line 511, in main
suggestions.extend(check())
^^^^^^^
File "/home/ec2-user/platform/tensorboard-server/tensorboard/tensorboard/tools/diagnose_tensorboard.py", line 81, in wrapper
result = fn()
^^^^
File "/home/ec2-user/platform/tensorboard-server/tensorboard/tensorboard/tools/diagnose_tensorboard.py", line 267, in tensorflow_python_version
import tensorflow as tf
ModuleNotFoundError: No module named 'tensorflow'
--- check: tensorboard_data_server_version
INFO: no data server installed
--- check: tensorboard_binary_path
INFO: which tensorboard: None
--- check: addrinfos
socket.has_ipv6 = True
socket.AF_UNSPEC = <AddressFamily.AF_UNSPEC: 0>
socket.SOCK_STREAM = <SocketKind.SOCK_STREAM: 1>
socket.AI_ADDRCONFIG = <AddressInfo.AI_ADDRCONFIG: 32>
socket.AI_PASSIVE = <AddressInfo.AI_PASSIVE: 1>
Loopback flags: <AddressInfo.AI_ADDRCONFIG: 32>
Loopback infos: [(<AddressFamily.AF_INET6: 10>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('::1', 0, 0, 0)), (<AddressFamily.AF_INET: 2>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('127.0.0.1', 0))]
Wildcard flags: <AddressInfo.AI_PASSIVE: 1>
Wildcard infos: [(<AddressFamily.AF_INET: 2>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('0.0.0.0', 0)), (<AddressFamily.AF_INET6: 10>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('::', 0, 0, 0))]
--- check: readable_fqdn
INFO: socket.getfqdn(): 'ip-172-31-31-15.us-east-2.compute.internal'
--- check: stat_tensorboardinfo
INFO: directory: /tmp/.tensorboard-info
INFO: os.stat(...): os.stat_result(st_mode=16895, st_ino=840, st_dev=29, st_nlink=2, st_uid=1000, st_gid=1000, st_size=60, st_atime=1717811879, st_mtime=1717813718, st_ctime=1717813718)
INFO: mode: 0o40777
--- check: source_trees_without_genfiles
INFO: tensorboard_roots (0): []; bad_roots (0): []
--- check: full_pip_freeze
INFO: pip freeze --all:
anaconda-anon-usage @ file:///croot/anaconda-anon-usage_1710965072196/work
archspec @ file:///croot/archspec_1709217642129/work
boltons @ file:///work/perseverance-python-buildout/croot/boltons_1698851177130/work
Brotli @ file:///croot/brotli-split_1714483155106/work
certifi @ file:///home/conda/feedstock_root/build_artifacts/certifi_1707022139797/work/certifi
cffi @ file:///croot/cffi_1714483155441/work
charset-normalizer @ file:///tmp/build/80754af9/charset-normalizer_1630003229654/work
conda @ file:///home/conda/feedstock_root/build_artifacts/conda_1715631928597/work
conda-content-trust @ file:///croot/conda-content-trust_1714483159009/work
conda-libmamba-solver @ file:///croot/conda-libmamba-solver_1706733287605/work/src
conda-package-handling @ file:///croot/conda-package-handling_1714483155348/work
conda_package_streaming @ file:///work/perseverance-python-buildout/croot/conda-package-streaming_1698847176583/work
cryptography @ file:///croot/cryptography_1714660666131/work
distro @ file:///croot/distro_1714488253808/work
frozendict @ file:///home/conda/feedstock_root/build_artifacts/frozendict_1715092752354/work
idna @ file:///croot/idna_1714398848350/work
jsonpatch @ file:///croot/jsonpatch_1714483231291/work
jsonpointer==2.1
libmambapy @ file:///home/conda/feedstock_root/build_artifacts/mamba-split_1711394305528/work/libmambapy
mamba @ file:///home/conda/feedstock_root/build_artifacts/mamba-split_1711394305528/work/mamba
menuinst @ file:///croot/menuinst_1714510563922/work
packaging @ file:///croot/packaging_1710807400464/work
pip==24.0
platformdirs @ file:///work/perseverance-python-buildout/croot/platformdirs_1701732573265/work
pluggy @ file:///work/perseverance-python-buildout/croot/pluggy_1698805497733/work
pycosat @ file:///croot/pycosat_1714510623388/work
pycparser @ file:///tmp/build/80754af9/pycparser_1636541352034/work
PySocks @ file:///work/perseverance-python-buildout/croot/pysocks_1698845478203/work
requests @ file:///croot/requests_1707355572290/work
ruamel.yaml @ file:///work/perseverance-python-buildout/croot/ruamel.yaml_1698863605521/work
setuptools==69.5.1
tqdm @ file:///croot/tqdm_1714567712644/work
truststore @ file:///work/perseverance-python-buildout/croot/truststore_1701735771625/work
urllib3 @ file:///croot/urllib3_1707770551213/work
wheel==0.43.0
zstandard @ file:///work/perseverance-python-buildout/croot/zstandard_1698847073368/work
Next steps
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Issue description
Please describe the bug as clearly as possible. How can we reproduce the
problem without additional resources (including external data files and
proprietary Python modules)?
Running USE_BAZEL_VERSION=6.5.0 bazel run tensorboard -- --logdir ~/imdb-example/
In my web browser the page successfully loads on localhost. There is a PCA visualization of my data. However, when switching to the TSNE or UMAP tab, a JavaScript error pop up appears.
From where I launched bazel run there is this error:
''W0607 19:17:28.954664 139993318159936 application.py:559] path /data/plugin/projector/standalone_bundle_no_vendor.js.map not found, sending 404''
It could be that "/vz_projector/" needs to be added somewhere in one of the bazel BUILD files because I found a standalone_bundle_no_vendor.js.map file here:
/home/ec2-user/.cache/bazel/_bazel_ec2-user/f3cce9080f38d85c2bdf63b91cbe73d3/execroot/org_tensorflow_tensorboard/bazel-out/k8-fastbuild/bin/tensorboard/plugins/projector/vz_projector/standalone_bundle_no_vendor.js.map
I would also be fine working with a standalone version of just the projector with
USE_BAZEL_VERSION=6.5.0 bazel run tensorboard/plugins/projector/vz_projector:standalone
However, the invokation seems to ignore any commandline args I pass after "--"
Any advice or workarounds would be appreciated!
P.S. setting the version env was a workaround for this error:
(tf) [ec2-user@zzz]$ bazel run tensorboard/plugins/projector/vz_projector:standalone ERROR: Traceback (most recent call last): File "/home/ec2-user/platform/tensorboard-server/tensorboard/WORKSPACE", line 17, column 15, in <toplevel> versions.check( File "/home/ec2-user/.cache/bazel/_bazel_ec2-user/f3cce9080f38d85c2bdf63b91cbe73d3/external/bazel_skylib/lib/versions.bzl", line 115, column 17, in _check_bazel_version fail("Current Bazel version is {}; expected at most {}".format( Error in fail: Current Bazel version is 7.1.2; expected at most 6.999.0 ERROR: Error computing the main repository mapping: Encountered error while reading extension file 'web/repositories.bzl': no such package '@@io_bazel_rules_webtesting//web': error loading package 'external': Could not load //external package
I was not not able to reproduce this. If you could provide a minimal data set to reproduce that would be helpful.
I do not think the problems has to do with the .js.map file. Those are not critical for the app to run.
I will add this to our on duty hotlist to look into. Unfortunately, our current priorities will not allow us to invest much time into fixing projector plugin issues.