Pinned Repositories
computing-pipeline
Pipeline to Extract Plant Phenotypes from Reference Data
documentation
TERRAref documentation
drone-pipeline
Generalizing the TERRA REF pipelines for processing data from UAV's
extractors-hyperspectral
Scripts and code relevant to the SWIR and VNIR cameras.
extractors-multispectral
Scripts and code relevant to the FLIR, PSII, NDVI, PRI and active reflectance (Crop Circle) sensors.
icasa
ICASA vocabulary
reference-data
Coordination of Data Products and Standards for TERRA reference data
terrautils
Python library for TERRA-REF specific modules and methods, e.g. those shared by multiple extractors.
tutorials
Learn to use TERRA REF data and software
workflow-pilot
Github repo for ECSS workflow pilot project
A Reference Phenotyping Platform for Crop Breeding and Improvement's Repositories
terraref/computing-pipeline
Pipeline to Extract Plant Phenotypes from Reference Data
terraref/reference-data
Coordination of Data Products and Standards for TERRA reference data
terraref/tutorials
Learn to use TERRA REF data and software
terraref/documentation
TERRAref documentation
terraref/extractors-hyperspectral
Scripts and code relevant to the SWIR and VNIR cameras.
terraref/extractors-multispectral
Scripts and code relevant to the FLIR, PSII, NDVI, PRI and active reflectance (Crop Circle) sensors.
terraref/terrautils
Python library for TERRA-REF specific modules and methods, e.g. those shared by multiple extractors.
terraref/drone-pipeline
Generalizing the TERRA REF pipelines for processing data from UAV's
terraref/extractors-stereo-rgb
Scripts and code relevant to the 8MP RGB stereo 3D cameras.
terraref/icasa
ICASA vocabulary
terraref/traits
Species traits data
terraref/traitvis-webapp
Shiny application for visualizing trait data
terraref/workflow-pilot
Github repo for ECSS workflow pilot project
terraref/extractors-metadata
Scripts and code for generally applicable metadata extraction, e.g. extracting geospatial footprints from multiple sensors' metadata.
terraref/laser3d
ply file to plot level las file science function package
terraref/search-api
flask api for advanced search interface
terraref/search-frontend
frontend for advanced search interface
terraref/sensor-metadata
Device and sensor fixed metadata
terraref/extractors-3dscanner
Scripts and code relevant to the 3D height scanner.
terraref/extractors-environmental
Scripts and code relevant to the CO2 and environmental logger sensors, as well as Maricopa lightning/weather/irrigation data.
terraref/quality-metrics
Repo for general QA/QC tools and extractors.
terraref/terraref.github.io
[Deprecated] Original website content for the TERRA-REF reference phenotyping platform
terraref/brapi
Breeder's API implementation for TERRA-REF
terraref/data-paper
terraref/data-publication
Just the content going to Dryad; see also terraref/data-paper for data descriptor
terraref/kubeadm-terraform
Terraform plan that uses data-8's kubeadm bootstrap for Kubernetes on Openstack
terraref/service-products
A REST server that provide helps locate file products.
terraref/stereo_rgb
the new science functions in Stereo-RGB extractor
terraref/toolserver-dockerfiles
TERRA-REF Dockerfiles for Clowder toolserver
terraref/workbench-catalog
Catalog of services available via TERRA-REF Analysis Workbench