Crash on loading an HDT file
Closed this issue · 1 comments
jakubklimek commented
Part of the endpoint? (leave empty if you don't know)
- Backend (qendpoint-backend)
- Store (qendpoint-backend)
- Core (qendpoint-core)
- Frontend (qendpoint-frontend)
- Other
Description of the issue
I wanted to try qEndpoint out. I used the docker version using docker run -p 1234:1234 --name qendpoint qacompany/qendpoint. When trying to upload a downloaded version of this HDT file, I got "Upload: unknown error", breaking the instance. Subsequent tries to do anything end up with:
INFO: Initializing Spring DispatcherServlet 'dispatcherServlet'
11:07:16.249 [http-nio-1234-exec-1] INFO o.s.web.servlet.DispatcherServlet - Initializing Servlet 'dispatcherServlet'
11:07:16.251 [http-nio-1234-exec-1] INFO o.s.web.servlet.DispatcherServlet - Completed initialization in 2 ms
cdHeader:[[form-data], [name, "file"], [filename, "nkod.hdt"]]
field:file
11:07:22.722 [http-nio-1234-exec-9] INFO c.t.q.controller.EndpointController - Trying to index nkod.hdt
11:07:22.723 [http-nio-1234-exec-9] INFO c.t.qendpoint.controller.Sparql - Clear old store
11:07:22.723 [http-nio-1234-exec-9] INFO c.t.qendpoint.store.EndpointStore - Shutdown merge
11:07:22.725 [http-nio-1234-exec-9] INFO c.t.qendpoint.store.EndpointStore - Shutdown A
11:07:22.726 [http-nio-1234-exec-9] INFO c.t.qendpoint.store.EndpointStore - Shutdown B
11:07:22.727 [http-nio-1234-exec-9] INFO c.t.qendpoint.store.EndpointStore - Shutdown done
cdHeader:[[form-data], [name, "file"], [filename, "nkod.hdt"]]
field:file
11:07:23.794 [http-nio-1234-exec-10] INFO c.t.q.controller.EndpointController - Trying to index nkod.hdt
Oct 22, 2024 11:07:23 AM org.apache.catalina.core.StandardWrapperValve invoke
SEVERE: Servlet.service() for servlet [dispatcherServlet] in context with path [] threw exception [Request processing failed: java.lang.NullPointerException: Cannot invoke "com.the_qa_company.qendpoint.compiler.SparqlRepository.getOptions()" because "this.sparqlRepository" is null] with root cause
java.lang.NullPointerException: Cannot invoke "com.the_qa_company.qendpoint.compiler.SparqlRepository.getOptions()" because "this.sparqlRepository" is null
at com.the_qa_company.qendpoint.controller.Sparql.loadFile(Sparql.java:463)
at com.the_qa_company.qendpoint.controller.EndpointController.clearData(EndpointController.java:158)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:207)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:152)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:117)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:884)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:797)
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:87)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1080)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:973)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1011)
at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:914)
at jakarta.servlet.http.HttpServlet.service(HttpServlet.java:731)
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:885)
at jakarta.servlet.http.HttpServlet.service(HttpServlet.java:814)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:223)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:158)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:185)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:158)
at org.springframework.security.web.FilterChainProxy.lambda$doFilterInternal$3(FilterChainProxy.java:231)
at org.springframework.security.web.ObservationFilterChainDecorator$FilterObservation$SimpleFilterObservation.lambda$wrap$1(ObservationFilterChainDecorator.java:399)
at org.springframework.security.web.ObservationFilterChainDecorator$AroundFilterObservation$SimpleAroundFilterObservation.lambda$wrap$1(ObservationFilterChainDecorator.java:297)
at org.springframework.security.web.ObservationFilterChainDecorator.lambda$wrapSecured$0(ObservationFilterChainDecorator.java:79)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:125)
at org.springframework.security.web.access.intercept.AuthorizationFilter.doFilter(AuthorizationFilter.java:100)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:173)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:126)
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:120)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:173)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:100)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:173)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:179)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:173)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:173)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:107)
at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:93)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:173)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.web.filter.CorsFilter.doFilterInternal(CorsFilter.java:91)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:173)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.security.web.header.HeaderWriterFilter.doHeadersAfter(HeaderWriterFilter.java:90)
at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:75)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:173)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.security.web.context.SecurityContextHolderFilter.doFilter(SecurityContextHolderFilter.java:82)
at org.springframework.security.web.context.SecurityContextHolderFilter.doFilter(SecurityContextHolderFilter.java:69)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:173)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:62)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:173)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.security.web.session.DisableEncodeUrlFilter.doFilterInternal(DisableEncodeUrlFilter.java:42)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.wrapFilter(ObservationFilterChainDecorator.java:186)
at org.springframework.security.web.ObservationFilterChainDecorator$AroundFilterObservation$SimpleAroundFilterObservation.lambda$wrap$0(ObservationFilterChainDecorator.java:280)
at org.springframework.security.web.ObservationFilterChainDecorator$ObservationFilter.doFilter(ObservationFilterChainDecorator.java:170)
at org.springframework.security.web.ObservationFilterChainDecorator$VirtualFilterChain.doFilter(ObservationFilterChainDecorator.java:134)
at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:233)
at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:191)
at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:351)
at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:267)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:185)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:158)
at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:185)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:158)
at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:185)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:158)
at org.springframework.web.filter.ServerHttpObservationFilter.doFilterInternal(ServerHttpObservationFilter.java:109)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:185)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:158)
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:185)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:158)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:177)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:542)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:119)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:357)
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:400)
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:859)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1734)
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:52)
at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Thread.java:833)
Excepted behavior
No response
Obtained behavior
No response
How to reproduce
No response
Endpoint version
No response
Do I want to contribute to fix it?
No
Something else?
No response
ate47 commented
It will be fixed when the next version will release, but it is better to directly load the endpoint with the HDT in the hdt-store directory and not to load it like an RDF file.