VADR for WNV
Closed this issue · 2 comments
kevinlibuit commented
VADR for WNV
kapsakcj commented
I was able to run VADR on one WNV assembly from a collaborator. Not deeply tested, but it's a starting point. VADR options listed here: #114 (comment)
kapsakcj commented
vadr_opts for WNV have changed slightly since --split --cpu ~{cpu} is now included in the main task block, no need to supply with vadr_opts
OLD:
vadr_opts="--split --cpu 2 --mkey flavi --mdir /opt/vadr/vadr-models-flavi/ --nomisc --noprotid --out_allfasta"
NEW:
vadr_opts="--mkey flavi --mdir /opt/vadr/vadr-models-flavi/ --nomisc --noprotid --out_allfasta"