Issue with running snakemake
szhang99-bu opened this issue · 1 comments
szhang99-bu commented
I am currently all set up according to the instruction, then should we run snakemake in the base environment?
If so, when I am running the pipeline for either my own data or the test data, a syntax error occurs:
SyntaxError:
Input and output files have to be specified as strings or list of strings/
xxxxxx/xxxxx/xxxxxx/ scib-pipeline/Snakefile, line 10, in module
xxxxxx/xxxxx/xxxxxx/ scib-pipeline/scripts/preprocessing/Snakefile, line 23, in module