Deprecation warning for size aesthetic thrown by geom_edge_link (and similar) since ggplot2 version 3.4.0
david-barnett opened this issue · 3 comments
david-barnett commented
Hi Thomas,
Since ggplot2 3.4.0 most ggraph edge geoms show deprecation warnings relating to use of the size aesthetic
Probably you are aware of this problem, but I didn't see a related issue, so I added a reprex below
thanks for your work on ggraph and ggplot2 (and everything else too!) :)
packageVersion("ggraph")
#> [1] '2.1.0'
library(ggraph)
#> Loading required package: ggplot2
library(tidygraph)
#>
#> Attaching package: 'tidygraph'
#> The following object is masked from 'package:stats':
#>
#> filter
graph <- as_tbl_graph(highschool)
p <- ggraph(graph, layout = "kk") + geom_edge_link()
p
#> Warning: Using the `size` aesthetic in this geom was deprecated in ggplot2 3.4.0.
#> ℹ Please use `linewidth` in the `default_aes` field and elsewhere instead.
options(lifecycle_verbosity = "error")
p
#> Error in `geom_edge_link()`:
#> ! Problem while setting up geom aesthetics.
#> ℹ Error occurred in the 1st layer.
#> Caused by error:
#> ! Using the `size` aesthetic in this geom was deprecated in ggplot2
#> 3.4.0.
#> ℹ Please use `linewidth` in the `default_aes` field and elsewhere instead.
#> Backtrace:
#> ▆
#> 1. ├─base::tryCatch(...)
#> 2. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
#> 3. │ ├─base (local) tryCatchOne(...)
#> 4. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
#> 5. │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
#> 6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
#> 7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
#> 8. ├─base::withCallingHandlers(...)
#> 9. ├─base::saveRDS(...)
#> 10. ├─base::do.call(...)
#> 11. ├─base (local) `<fn>`(...)
#> 12. └─global `<fn>`(input = base::quote("sappy-tern_reprex.R"))
#> 13. └─rmarkdown::render(input, quiet = TRUE, envir = globalenv(), encoding = "UTF-8")
#> 14. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
#> 15. └─knitr:::process_file(text, output)
#> 16. ├─base::withCallingHandlers(...)
#> 17. ├─knitr:::process_group(group)
#> 18. └─knitr:::process_group.block(group)
#> 19. └─knitr:::call_block(x)
#> 20. └─knitr:::block_exec(params)
#> 21. └─knitr:::eng_r(options)
#> 22. ├─knitr:::in_input_dir(...)
#> 23. │ └─knitr:::in_dir(input_dir(), expr)
#> 24. └─knitr (local) evaluate(...)
#> 25. └─evaluate::evaluate(...)
#> 26. └─evaluate:::evaluate_call(...)
#> 27. ├─evaluate (local) handle(...)
#> 28. │ └─base::try(f, silent = TRUE)
#> 29. │ └─base::tryCatch(...)
#> 30. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
#> 31. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
#> 32. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
#> 33. ├─base::withCallingHandlers(...)
#> 34. ├─base::withVisible(value_fun(ev$value, ev$visible))
#> 35. └─knitr (local) value_fun(ev$value, ev$visible)
#> 36. └─knitr (local) fun(x, options = options)
#> 37. ├─base::withVisible(knit_print(x, ...))
#> 38. ├─knitr::knit_print(x, ...)
#> 39. └─knitr:::knit_print.default(x, ...)
#> 40. └─evaluate (local) normal_print(x)
#> 41. ├─base::print(x)
#> 42. └─ggplot2:::print.ggplot(x)
#> 43. ├─ggplot2::ggplot_build(x)
#> 44. ├─ggraph:::ggplot_build.ggraph(x)
#> 45. ├─base::NextMethod()
#> 46. └─ggplot2:::ggplot_build.ggplot(x)
#> 47. └─ggplot2:::by_layer(...)
#> 48. ├─rlang::try_fetch(...)
#> 49. │ ├─base::tryCatch(...)
#> 50. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
#> 51. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
#> 52. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
#> 53. │ └─base::withCallingHandlers(...)
#> 54. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
#> 55. └─l$compute_geom_2(d)
#> 56. └─ggplot2 (local) compute_geom_2(..., self = self)
#> 57. └─self$geom$use_defaults(data, self$aes_params, modifiers)
#> 58. └─ggplot2 (local) use_defaults(..., self = self)
#> 59. └─ggplot2:::deprecate_soft0(...)
#> 60. └─lifecycle::deprecate_soft(..., user_env = user_env)
#> 61. └─lifecycle:::deprecate_stop0(msg)
#> 62. └─rlang::cnd_signal(...)
Created on 2022-11-12 with reprex v2.0.2
Session info
sessioninfo::session_info()
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#> ──────────────────────────────────────────────────────────────────────────────RoyalTS commented
Separately but relatedly: While scale_edge_size_*() exist, scale_edge_linewidth_*() do not.
thomasp85 commented
@RoyalTS there is (and have always been) scale_edge_width() which is kept as is (i.e. I will not change it to edge_linewidth)
thomasp85 commented
All instances of bad size use should have been removed from ggraph now, but there remains some issues inherited from ggforce... That needs to be fixed there