tiagochst

tiagochst's Stars

• bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.

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• daattali/timevis

  📅 Create interactive timeline visualizations in R

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• zwdzwd/sesame

  🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

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• nanxstats/ggsci

  🦄 Scientific journal and sci-fi themed color palettes for ggplot2

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• sgratzl/slack-cleaner

  delete slack messages and files. An improved version is at:

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• kdkorthauer/dmrseq

  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

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• MultiQC/example-plugin

  A miniature example of a MultiQC plugin.

  Language:Python86

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

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• nf-core/chipseq

  ChIP-seq peak-calling, QC and differential analysis pipeline.

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• aryeelab/hichipper

  A preprocessing and QC pipeline for HiChIP data

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• tiagochst/ELMER

  Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target genes

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• gladkia/igvR

  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser

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• hhcho/netsne

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• FischerJo/FAME

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• huynhvietlinh/HiCDataModel

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• BoevaLab/LILY

  Detection of super-enhancers in cancer data

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• tbepler/topaz

  Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

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• mlupien/C3D

  Cross Cell-type Correlation in DNaseI hypersensitivity

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• VandinLab/UNCOVER

  Source for UNCOVER (Sarto Basso, Hochbaum, Vandin, RECOMB 2018)

  Language:Python43

• danasilv/ModulOmics

  Infers cancer driver modules from DNA, RNA, PPI and regulatory network.

  Language:R91

• UrszulaCzerwinska/UrszulaCzerwinska.github.io

  Check out the section about me, blog is coming soon

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• nf-core/methylseq

  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

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• zwdzwd/GDC_DNA_methylation_QC

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• daranzolin/ViewPipeSteps

  Create tabs of View() output for each chained pipe

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• alpreyes/GENAVi

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• lordantonelli/thesis-model-icmc

  Theses and dissertation model of Instituto de Ciências Matemáticas e de Computação (ICMC).

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• sfirke/janitor

  simple tools for data cleaning in R

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• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.8k643

• Simon-Coetzee/funcivar

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• vinicius3w/memorial-progressao-ufpe

  Modelo LaTeX para a elaboração do Memorial Descritivo de Atividades

  Language:TeX114