tiboloic
Theoretical ecology, population genomics, evolutionary biology. Statistical geneticist @ Centre for Population & Disease Genomics
University Of QueenslandBrisbane, Australia
Pinned Repositories
Codonbias
glmmTMB
glmmTMB
GPDD
Data, code and results for: Thibaut L. M & Connolly S. R. 2020: Hierarchical modeling strengthen evidence for density-dependence in observational time series of population dynamics. Ecology. https://doi.org/10.1002/ecy.2893
large-scale-linear-algebra
Proof of concept, tools and utilities for extremely large scale linear algebra (n>= 1 000 000)
LIMBRreanalysis
Code and results from Thibaut & Giannoulatou 2019, submitted to the American Journal of Human Genetics
metaanalysis
Meta analysis of the relationship between genetic diversity and total species richness
nuGLMM
Model based inference for multivariate abundance data
optiRVIS
An optimized Residual Variation Intolerance Score
powerSFS
A Novel Genetic Constraint Metric Based on Mathematical Modeling of the Site Frequency Spectrum of Missense Variants in Large Population Genomics Databases
RIC
R port of Simone Romano's implementation of the Randomized Information Coefficient in Matlab. https://github.com/ialuronico/RandomizedInformationCoefficient
tiboloic's Repositories
tiboloic/nuGLMM
Model based inference for multivariate abundance data
tiboloic/RIC
R port of Simone Romano's implementation of the Randomized Information Coefficient in Matlab. https://github.com/ialuronico/RandomizedInformationCoefficient
tiboloic/Codonbias
tiboloic/glmmTMB
glmmTMB
tiboloic/GPDD
Data, code and results for: Thibaut L. M & Connolly S. R. 2020: Hierarchical modeling strengthen evidence for density-dependence in observational time series of population dynamics. Ecology. https://doi.org/10.1002/ecy.2893
tiboloic/large-scale-linear-algebra
Proof of concept, tools and utilities for extremely large scale linear algebra (n>= 1 000 000)
tiboloic/LIMBRreanalysis
Code and results from Thibaut & Giannoulatou 2019, submitted to the American Journal of Human Genetics
tiboloic/metaanalysis
Meta analysis of the relationship between genetic diversity and total species richness
tiboloic/optiRVIS
An optimized Residual Variation Intolerance Score
tiboloic/powerSFS
A Novel Genetic Constraint Metric Based on Mathematical Modeling of the Site Frequency Spectrum of Missense Variants in Large Population Genomics Databases
tiboloic/ranoe
Intolerance score: regularization of observed/expected LoF variants counts using a random effect
tiboloic/splicescore
Intolerance score to splice altering genomic variation
tiboloic/SBayesR-power
Numerical integration for estimating the power of an SBayesR analysis
tiboloic/structural-constraint
Calculating missense constraint within protein tertiary structures
tiboloic/turkey
Identification of turkey species from archeological bones
tiboloic/WHBH
Epidemiological dynamics simulator with within host process-based pathogen dynamics