tillrobin/iMGMC

PICRUSt2 compatible files

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alow711 commented

Hi Till

I get the error "usage: conda [-h] [-V] command ...
conda: error: unrecognized arguments: picrust pynast fasttree" when I key conda create iMGMC-PICRUSt -c bioconda picrust pynast fasttree
Do you know how to solve this issue?

Also I would like to use PICRUSt 2 with my amplicon sequences with your reference database. Do you have the PICRUST2 ready files in the following format?
pro_ref.fna.gz
pro_ref.hmm
pro_ref.model
pro_ref.tre

If not, I would greatly appreciate some guidance on how to get the files ready for PICRUST2.

thank you, kind regards
Adrian

tillrobin commented

Hi Adiran,
sorry there is a error in the bioconda command:
"conda create iMGMC-PICRUSt -c bioconda picrust pynast fasttree"
correct version:
"conda create -n iMGMC-PICRUSt -c bioconda picrust pynast fasttree"

PICRUSt2 is on my toDo list.

Best Till

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