tinevez
Facility engineer, microscopist, data analyst for Life-Sciences.
Institut PasteurParis, France
Pinned Repositories
imglib2-icy
imglib2-icy ImgLib2 wrappers for Icy.
KymographTracker
Icy KymographTracker.
latex-auto-template
Template repo made for elaborating LaTeX documents that are automatically compiled and published with github actions.
mastodon-bvv
Mastodon-BVV – 3D visualization for images and tracking data in mastodon.
mastodon-mesh
Playground to see if a Mesh implementation using Mastodon is useful.
matlab-tree
A MATLAB class to represent the tree data structure.
msdanalyzer
A MATLAB class for Mean Square Displacement analysis.
simpletracker
A simple particle tracking algorithm for MATLAB that can deal with gaps.
TrackMate-TrackAnalysis
Basic track analysis, plugged as TrackMate modules.
tinevez's Repositories
tinevez/matlab-tree
A MATLAB class to represent the tree data structure.
tinevez/msdanalyzer
A MATLAB class for Mean Square Displacement analysis.
tinevez/simpletracker
A simple particle tracking algorithm for MATLAB that can deal with gaps.
tinevez/latex-auto-template
Template repo made for elaborating LaTeX documents that are automatically compiled and published with github actions.
tinevez/imglib2-icy
imglib2-icy ImgLib2 wrappers for Icy.
tinevez/mastodon-mesh
Playground to see if a Mesh implementation using Mastodon is useful.
tinevez/TrackMate-TrackAnalysis
Basic track analysis, plugged as TrackMate modules.
tinevez/KymographTracker
Icy KymographTracker.
tinevez/mastodon-bvv
Mastodon-BVV – 3D visualization for images and tracking data in mastodon.
tinevez/PMAnisotropicDiffusionImgLib2
Perona & Malik anisotropic diffusion for Icy using ImgLib2
tinevez/trackastra
tinevez/TrackMate-extras
Some extra modules for TrackMate
tinevez/adventofcode2022
https://adventofcode.com/2022/
tinevez/CircleSkinner
A Fiji plugin for the automated detection and quantification of circular structure in images.
tinevez/clij-parent-pom
tinevez/clij2-plugin-template
tinevez/DeformingMesh3D-plugin
An imagej/fiji plugin for interactive segmentation of 3D
tinevez/Demo-Swing-Bug
tinevez/elephant-client
A client implementation of ELEPHANT
tinevez/fmi-trackmate-addons
Addons for TrackMate in ImageJ
tinevez/javasphinx-sphinx3
Sphinx extension for documenting Java projects - DEPRECATED
tinevez/labkit-ui
Advanced Tool for Labeling And Segmentation
tinevez/neubias-springer-book-2020
Code and images for the Springer book: Bioimage Data Analysis Workflows, edited by Kota Miura and Nataša Sladoje
tinevez/NEUBIAS_AnalystSchool2019
NEUBIAS Bioimage Analyst School 2019
tinevez/omnipose
Omnipose: a high-precision solution for morphology-independent cell segmentation
tinevez/ProjectEulerJYT
My (JYT) Python solutions to the Euler Project problems (https://projecteuler.net/)
tinevez/stardist-icy
StarDist plugin for Icy.
tinevez/tinevez
tinevez/TrackMate-YOLO
YOLO integration as a detector in TrackMate.
tinevez/TubeSkinner
TubeSkinner: An Icy plugin to unwrap 3D fluorescence images of tube-like structures.