Pinned Repositories
Anki_FDeluxe
Conversion of flashcards from Anki to Flashcards Deluxe
article-epub
Tool to convert scientific articles available as HTML to EPUB
autism_rnaseq
Collaboration with Chetty lab to analyze Autism RNA-seq datasets
masscompare
Mass comparing tool for LC-MS data
Quizlet_FDeluxe
Quizlet to Flashcards Deluxe conversion
SchrodingerWorkflow
Workflows for virtual screening process on Schrodinger software
tithuytrang.github.io
Website project
Virtual_Screening_analysis-visuals
Virtual screening results: data analysis and visualizations
tithuytrang's Repositories
tithuytrang/article-epub
Tool to convert scientific articles available as HTML to EPUB
tithuytrang/autism_rnaseq
Collaboration with Chetty lab to analyze Autism RNA-seq datasets
tithuytrang/SchrodingerWorkflow
Workflows for virtual screening process on Schrodinger software
tithuytrang/tithuytrang.github.io
Website project
tithuytrang/Virtual_Screening_analysis-visuals
Virtual screening results: data analysis and visualizations
tithuytrang/Anki_FDeluxe
Conversion of flashcards from Anki to Flashcards Deluxe
tithuytrang/admin-training
Galaxy Admin Training
tithuytrang/awesome-r
A curated list of awesome R frameworks, libraries and software.
tithuytrang/Brain_genomic_data
Brain-related -omics data
tithuytrang/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
tithuytrang/co-expression-analysis-WGCNA
tithuytrang/containers-introduction-training
Course website "Docker and Singularity for reproducible research: getting started with containers"
tithuytrang/covarr-de
Covariate model selection, differential and network expression.
tithuytrang/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
tithuytrang/csuWGCNA
Combination of signed and unsigned WGCNA
tithuytrang/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
tithuytrang/galaxy-tricks
Useful tricks and tipps for Galaxy users
tithuytrang/Hanhan_Data_Science_Practice
data analysis, big data development, cloud, and any other cool things!
tithuytrang/how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
tithuytrang/IntroDataScience
Book: Pratitioner's Guide to Data Science (https://scientistcafe.com/ids/)
tithuytrang/Llama-Tests
tithuytrang/omnipath-to-hipathia
Parser to use omnipath networks from hipathia
tithuytrang/open-data-registry
A registry of publicly available datasets on AWS
tithuytrang/penda
PenDA is a rank-based method for personalized differential analysis.
tithuytrang/preNivolumabOnNivolumab
EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
tithuytrang/RNA-seq
RNA-seq alignment and analysis pipeline
tithuytrang/rworkshop-practicals
For teaching
tithuytrang/singularity
Singularity has been EOL'ed, see Apptainer
tithuytrang/training-collection
Collection of bioinformatics training materials
tithuytrang/transcriptutorial
This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL