tobiasrausch

Researcher in Computational Genomics

EMBLGermany

Pinned Repositories

delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Language:C++445 34 361137
sansa
Structural variant VCF annotation, duplicate removal and comparison
Language:C++28 3 61
dicey
In-silico PCR, primer design and padlock design for in-situ sequencing
Language:C++49 6 144
tracy
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Language:C++101 7 5221
alfred
BAM Statistics, Feature Counting and Annotation
Language:C++145 10 4512
ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Language:Shell74 7 636
lorax
A long-read analysis toolbox for cancer and population genomics
Language:C++20 3 11
nRex
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Language:Shell12 3 02
vc
A tutorial on structural variant calling for short read sequencing data
Language:R26 3 22
wally
Wally: Visualization of aligned sequencing reads and contigs
Language:C++109 3 106

tobiasrausch's Repositories

tobiasrausch/alfred
BAM Statistics, Feature Counting and Annotation
Language:C++145 10 4512
tobiasrausch/wally
Wally: Visualization of aligned sequencing reads and contigs
Language:C++109 3 106
tobiasrausch/ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Language:Shell74 7 636
tobiasrausch/vc
A tutorial on structural variant calling for short read sequencing data
Language:R26 3 22
tobiasrausch/lorax
A long-read analysis toolbox for cancer and population genomics
Language:C++20 3 11
tobiasrausch/nRex
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Language:Shell12 3 02
tobiasrausch/rayas
Templated insertion discovery
Language:C++8 3 00
tobiasrausch/tenX
Tools for 10X
Language:C++8 3 11
tobiasrausch/covid19
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
Language:Python6 4 31
tobiasrausch/rdxon
Reference-free FASTQ filter for rare germline and somatic variants
Language:C++5 3 0
tobiasrausch/repliseq
Repli-Seq analysis pipeline
Language:C++5 3 0
tobiasrausch/kmerdbg
Scripts to build and analyze compacted de Bruijn graphs
Language:R4 1 0
tobiasrausch/RNAseq
RNA-Seq processing pipeline
Language:Shell3 3 01
tobiasrausch/allis
Allele-specific expression
Language:C++2 3 02
tobiasrausch/circosplots
Scripts to generate circos plots
Language:Python2 3 01
tobiasrausch/coral
Coral: COpy-numbeR ALterations
Language:C++2 4 0
tobiasrausch/lamp
LAMP testing (Covid screening)
Language:R2 3 0
tobiasrausch/ml2
Machine Learning
Language:C++2 3 0
tobiasrausch/sv
Structural variant calling tutorial using long-reads.
Language:R2 1 00
tobiasrausch/vcfaid
VCFaid: Genotype likelihood based GQ estimation
Language:C++2 3 0
tobiasrausch/workflows
Workflows
Language:Common Workflow Language2 3 0
tobiasrausch/bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Language:C1 1 0
tobiasrausch/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 3 0
tobiasrausch/dbg
dbg stuff
Language:Dockerfile1 3 0
tobiasrausch/exercise1
exercise 1
1 3 01
tobiasrausch/indexingtests
Indexing Tests
Language:C++1 3 0
tobiasrausch/phaseBam
Phase a BAM file using a phased SNP scaffold
Language:C++1 3 0
tobiasrausch/pods
Kubernetes (K8s) stuff
Language:Shell1 3 0
tobiasrausch/t-all
Scripts
Language:R1 3 0
tobiasrausch/tobiasrausch.github.io
Homepage of Tobias Rausch
Language:HTML1 3 0