affymetrix
There are 23 repositories under affymetrix topic.
BgeeDB/bgee_pipeline
Source code of the Bgee pipeline used to build the Bgee database
HenrikBengtsson/aroma.affymetrix
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
hernanmd/BioScripts
A collection of miscellaneous bioinformatics scripts
SiYangming/simpleaffy
backup for https://www.bioconductor.org/packages/3.12/bioc/html/simpleaffy.html
cemordaunt/AutismCordBloodExpression
Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies
CNuge/miscellaneous_scripts
Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk
gustaveroussy/apt.cytoscan.2.4.0
Affymetrix CytoScan (750k / HD) processing using apt-copynumber-cyto-ssa (2.4.0)
gustaveroussy/apt.oncoscan.2.4.0
Affymetrix OncoScan / OncoScan_CNV processing using apt-copynumber-onco-ssa (2.4.0)
HenrikBengtsson/Affx-Fusion-SDK
:microscope: Affymetrix Fusion Software Developers Kit (SDK)
paulstothard/genotype_conversion_file_builder
A pipeline for determining the genomic location and transformation rules for the variants described in Illumina or Affymetrix genotype panel manifest files.
roman-tremmel/Affymetrix-HTA2.0-Transcript-cluster-annotation
App to illustrate the history of transcript cluster annotations of the Affy array HTA2.0
tpoorten/leaf_print
R scripts & functions for SNP data analysis of genotyping data from Affymetrix Axiom arrays
uribalb/genex
Gene expression experiments using Python and R
cnr-ibba/SMARTER-database
Smarter database repository
oheil/AffyCelFiles.jl
read Affymetrix .CEL files
xindong95/DEAP
Differential Expression Analysis Pipeline
zqzneptune/affyio
Updated version to handle CEL files
fboulnois/made
Microarray Analysis of Differential Expression
genepattern/AffySTExpressionFileCreator
Creates a GCT file from a set of CEL files from Affymetrix ST arrays.
gustaveroussy/apt.snp6.1.20.0
Affymetrix GenomeWideSNP_6 processing using apt-copynumber-workflow (1.20.0)
hernanmd/SSNPs_WCF2018
Find shared SNPs between different microarray chips
xlxs4/r-openblas-ci
The fruits of my labor to get OpenBLAS to work with R and fix the p_thread22() error in affy::rma()