allele-frequencies
There are 22 repositories under allele-frequencies topic.
lczech/grenedalf
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
Tom-Jenkins/seascape_rda_tutorial
Tutorial for performing redundancy analysis
swvanderlaan/MetaGWASToolKit
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
ramonamerong/hladownload
A tool for downloading HLA alleles, epitopes and frequencies
smail-lab-cmh/ga4k-sv-finder
Long read structural variants in rare disease cohort
alipirani88/samosa
(S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.
bailey-lab/coiaf
Complexity of Infection Estimation with Allele Frequencies
Hansi-Thewarapperuma/Inherited_Risk_Detector
Identification of cancer-causing variants
jeffersonfparil/poolgen
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
remytuyeras/HaploDynamics
A python library to develop genomic data simulators
bbitarello/NCD-Statistics
Code for NCD1 and NCD2 statistics to detect long-term balancing selection
nriddiford/svSupport
A tool to find reads supporting/opposing structural variant breakpoints
robertopreste/allfreqs
Calculate allele frequencies from a sequence multialignment.
bioinf/afpaper
Scripts and data processing notes for Russian exome sequencing AF paper
eliorav/Population-Genotype-Frequency
A Python script that generate population genotype frequency file from 1000G data
endreth/jVCFparser
A command-line parser for VCF files designed for population genetics analyses.
kevin-wamae/AlleleFreqPipe
An R script for generating allele frequencies from DNA/amino acid sequence alignments.
sfbizzari/gnomADv4-Batch-tool-pythonAPI
Using gnomad-browser's GraphQL updated API to retrieve total joint allele frequencies, exome/genome allele frequencies and homozygote counts as well as population specific numbers for a batch of variants.
TomMakesThings/Wright-Fisher-Simulator
Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations
aagans/ALFRED-Revival
ALFRED Revival is an open-source project to rebuild the allele frequency database created and hosted by the Kidd Lab at Yale University. Due to a lack of ongoing support for the project, the original ALFRED has become difficult to use. ALFRED Revival is an interface utilizing modern technologies to interact with the new ALFRED Revival database.
CareyMetheringham/MardenPark
Code associated with 'Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic'
knifecake/fafreqs
A compilation of widely available forensic allele frequencies as an R package