alleles

There are 14 repositories under alleles topic.

  • ANHIG/IMGTHLA

    Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

    Language:Parrot2064715661

  • gear-genomics/indigo

    Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

    Language:JavaScript31567

  • SamueleSoraggi/HMMploidy

    A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models

    Language:R17452
  • AgrVATE

    VishnuRaghuram94/AgrVATE

    Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

    Language:HTML91162

  • sunyatin/ASCEND

    Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

    Language:Python8301

  • ramonamerong/hladownload

    A tool for downloading HLA alleles, epitopes and frequencies

    Language:Python4111

  • chanwkimlab/GAT

    GAT (Generic Genome-Wide Association Tool)

    Language:Python2100

  • tomdstanton/GetAlleles

    Extract alleles from genome assemblies

    Language:Python2132

  • endreth/jVCFparser

    A command-line parser for VCF files designed for population genetics analyses.

    Language:Java1100

  • Lucas-D-Lima/Alleles

    This is simple project to simulate Alleles

    Language:JavaScript0100

  • mahui-cn/WBBC

    Create admixture model files (*.F, *.alleles) based on WBBC project of Westlake University.

    Language:Python00

  • YujiYashima/ABO-System

    An application that handles and manipulates functions and variables related to the type of blood system: ABO System.

    Language:Jupyter Notebook0100

  • BU-ISCIII/download_bigsdb_api

    Script for interactive download schemas and definitions for any bigsdb installation using its api. Useful for downloading wg/cgMLST genes and alleles.

    Language:Python301

  • zkamvar/repvar

    R package to find samples that represent all variables

    Language:R21