allen-brain-atlas

There are 10 repositories under allen-brain-atlas topic.

BICCN/cell-locator
manually align specimens to annotated 3D spaces
Language:Python18 10 1677
oganm/allenBrain
:mouse: Acquiring images from allen brain atlas, mouse ISH experiments in R.
Language:R15 4 54
charliehass/ecallen
Python package for easy interaction with the Allen Institute for Brain Science
Language:Python9 2 13
Conxz/obsBrain
obsBrain: Observatory of Brain
Language:R1 2 00
IBT-FMI/ABI-connectivity-data_generator
Generate a package-manager-friendly archive of ABI connectivity maps registered in SAMRI standard space.
Language:Python1 1 00
IBT-FMI/ABI-expression-data_generator
Generate a package-manager-friendly archive of ABI gene expression maps registered in SAMRI standard space.
Language:Python1 1 00
lemphi97/x-tract_allen_web_interface
Language:Jinja1 2 11
lbrianna/ImageSlicer
Image Slicing with overlap. Takes an image, asks for user input about the number of rows and columns and slices into even parts. Customizable parameters.
Language:Python0 1 00
obophenotype/ABA_Uberon
Ontologized versions of the ABA structureGraphs - with mappings to Uberon
Language:Python7 172
obophenotype/allen-neuron-types
Building an ontology of specialised neuron types from data - well supported terms may later migrate to CL.
Language:Jupyter Notebook8 02