alternative-polyadenylation

There are 10 repositories under alternative-polyadenylation topic.

  • VCCRI/Sierra

    Discover differential transcript usage from polyA-captured single cell RNA-seq data

    Language:R4997117

  • iRNA-COSI/APAeval

    Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples

    Language:Python13826814

  • YiPeng-Gao/scDaPars

    Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)

    Language:R101241

  • Vivianstats/MAAPER

    Model-based analysis of APA using 3' end-linked reads

    Language:R6194

  • bcgsc/tasrkleat-TCGA-analysis-scripts

    This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa

    Language:Jupyter Notebook4901

  • bcgsc/tasrkleat

    Targeted analysis of alternative polyadenylation of candidate genes with RNA-Seq data

    Language:Python01021

  • Mayrlab/mca-utrome

    3' UTR cleavage site identification from the Mouse Cell Atlas

    Language:R0170

  • federicomarini/trend-db

    Home to the development of the TREND-DB application

    Language:R402

  • Imamachi-n/PASScan

    Determine polyA sites from 3'end sequence data

    Language:Python30

  • zyxue/kleat

    Cleavage site prediction via de novo assembly

    Language:Python221