amplicons

There are 10 repositories under amplicons topic.

nextgenusfs/amptk
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
Language:Python38 9 9314
jonas-fuchs/varVAMP
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Language:Python32 5 79
AmpliconSuite/AmpliconClassifier
Classify output of AmpliconArchitect to detect types of focal amplifications present
Language:Python15 5 1911
biocorecrg/vectorQC
A pipeline for assembling and annotation of vectors
Language:Nextflow5 2 130
cliu32/athlates
Language:Perl5 3 40
erinyoung/ACI
Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.
Language:Python3 1 60
AdamOss88/Raw-to-Rawr-server
Language:R0 2 00
DanielRCA/NCR-mtDNA_ampliconbasedngs
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
Language:Shell0 1 00
MBeyens/pyAmpli
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
Language:Python0 3 00
rosaak/Visualize_Taxa_Frequency
Visualizing taxa of different amplicon primer sets
Language:Jupyter Notebook1 0