antimicrobial-resistance-genes

There are 9 repositories under antimicrobial-resistance-genes topic.

  • tseemann/abricate

    :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

    Language:Perl3722920192

  • nf-core/funcscan

    (Meta-)genome screening for functional and natural product gene sequences

    Language:Nextflow749815120

  • iqbal-lab-org/Mykrobe_tb_workflow

    A workflow for analysis and resistance profiling of Mycobacterium tuberculosis nanopore data with Mykrobe

    Language:Python7493

  • lmc297/BTyper

    Rapid, in silico characterization of Bacillus cereus group isolates using WGS data

    6311

  • IbrahimElzahaby/Erasmus_MC_Internship

    Plasmidome analysis to track the transfer route of AMR genes in bacteria

    Language:Jupyter Notebook1100

  • lmc297/BMiner

    A companion application for analyzing and viewing BTyper output files in aggregate

    Language:R1311

  • iframst/HybridAMRgenotyping

    Different approaches to identify best practices for detection of AMR genes, including: total genomic DNA and plasmid DNA extractions, solo assembly of Illumina short-reads and of ONT long-reads, and two hybrid assembly pipelines

    Language:Shell0100

  • Nirmal2310/MetaSutra

    This pipeline takes the raw metagenomic WGS reads as an input, assemble them, separate the contigs in MAGs, taxonomically classify the MAGs and quantify the ARGs in the MAGs. The pipeline is built using R Shiny and people can run end to end analysis by doing few clicks on the screen.

    Language:HTML0100

  • viparc/fluidigm

    AMU and antimicrobial resistance genes in chicken farms

    Language:HTML0140