atacseq

There are 9 repositories under atacseq topic.

  • genome/bfx-workshop

    A course on genomics and bioinformatics from WU

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  • maxplanck-ie/ATACofthesnake

    Differential accessibility calculation for bulk-ATAC seq.

    Language:Python25151

  • amitjavilaventura/ATACseq-snakemake

    Snakemake pipeline to run ATAC-seq preprocessing. Still not working

    Language:Python1200
  • snATAC-and-scRNA-seq-plots

    CompBioLevings/snATAC-and-scRNA-seq-plots

    This repository consists of two **Jupyter Notebooks** created to document a comparison of a mouse brain snATAC-seq (single nuclei assay for transposase accessible chromatin with sequencing) data set from http://catlas.org/mousebrain/ with a scRNA-seq (single cell RNA sequencing) data set from the Linnarsson lab's http://mousebrain.org/. Specifically, in this code, I identify differences in neuronal vs other cell types in the mouse brain based on chromatin accessibility (snATAC-seq signal of a specific region aggregated by cell type/cluster) and gene expression (scRNA-seq signal aggregated by cell type/cluster).

    Language:Jupyter Notebook1101

  • crickbabs/BABS-ATACSeqPE

    This pipeline has been superceeded. Please use >>>

    Language:Groovy1100

  • utdal/ATACSeq-NextFlow-Pipeline

    This is an automated workflow pipeline for analyzing bulk ATAC-seq data, implemented primarily in bash scripts, and wrapped in a NextFlow workflow.

    Language:Shell1000

  • pipaber/Multi-omics

    This is a repository to show my experience analyzing different kinds of Omics data.

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  • CodeInTheSkies/Th17-Cell-Pathogenicity-Data

    Code accompanying the paper titled "Cholinergic control of Th17 cell pathogenicity in experimental autoimmune encephalomyelitis"

    Language:R10

  • Learning-jusuE404/bioinf545

    ATAC-seq lab for BIOINF545

    Language:Shell