barcoding

There are 11 repositories under barcoding topic.

  • hyeshik/poreplex

    A versatile sequenced read processor for nanopore direct RNA sequencing

    Language:Python79102914
  • MACSE_V2_PIPELINES

    ranwez/MACSE_V2_PIPELINES

    This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

    Language:Shell323139

  • ksimeono/macsGESTALT

    Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787

    Language:HTML8200

  • terrimporter/COI_NCBI_2018

    This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904

    Language:Perl6117

  • BenKuhnhaeuser/RattanID

    A molecular identification toolkit for rattan palms using genome skimming and target capture data.

    Language:Shell2100

  • Ulises-Rosas/BOLD-mineR

    :shipit: Wrapper for BOLD API (+ barcode auditing)

    Language:R2200
  • TB-gen

    dbespiatykh/TB-gen

    Web-app to explore Mycobacterium tuberculosis complex

    Language:Python1102

  • dbespiatykh/tblg

    A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file

    Language:Python1100

  • dbespiatykh/TBvar

    Variant detection and lineage barcoding of Mycobacterium tuberculosis

    Language:Python0100

  • iPsychonaut/FunDiSPipe

    FunDiSPipe is a comprehensive bioinformatics pipeline designed for the Fungal Diversity Survey (FunDiS), specifically tailored for analyzing fungal ITS data from Oxford Nanopore Technologies sequencing.

    Language:Python0100

  • Ulises-Rosas/DNA-Barcodes-BasicMetrics

    Variability measures of DNA barcodes sequences (i.e. Intraspecific and Interespecific)

    Language:R11