biochemical-networks
There are 17 repositories under biochemical-networks topic.
biosimulations/biosimulations
A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
biomass-dev/biomass
A Python Framework for Modeling and Analysis of Signaling Systems
pasmopy/pasmopy
Patient-Specific Modeling in Python
BhallaLab/FindSim
FindSim - A Framework for Integrating Neuronal Data and Signaling Models
biosimulators/Biosimulators_test_suite
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
charlesrocabert/MetEvolSim
MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.
draeger-lab/SBMLsqueezer
Context-sensitive creation of kinetic equations in biochemical networks
biosimulators/Biosimulators_COBRApy
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_COPASI
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_tellurium
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_BioNetGen
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_GillesPy2
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
bradduthie/RandomMatrixStability
R package associated with paper "Component response rate variation underlies the stability of highly complex finite systems" (Duthie, AB. 2020. Sci. Rep. 10:8296, https://www.nature.com/articles/s41598-020-64401-w). This repository contains all manuscript text and supplemental information, and all code for recreating analyses.
AGCT-DSL/AGCT
Another Genetic Circuit Transcriber
biomass-dev/BioMASS.jl
Julia interface to BioMASS
JRC-COMBINE/TROSS
Tropical Sensitivity Scores
manvelgasparyan/settling_time
This repository is used to determine the settling time of a given biochemical reaction network using the approach described in the manuscript "An Automated Model Reduction Method for Biochemical Reaction Networks" published in "Symmetry".