bioconductor
There are 520 repositories under bioconductor topic.
benjjneb/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
bernatgel/karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks
datacamp/rdocumentation-2.0
📚 RDocumentation provides an easy way to search the documentation for every version of every R package on CRAN and Bioconductor.
Oshlack/splatter
Simple simulation of single-cell RNA sequencing data
GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
mixOmicsTeam/mixOmics
Development repository for the Bioconductor package 'mixOmics '
sneumann/xcms
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
SingleR-inc/SingleR
Clone of the Bioconductor repository for the SingleR package.
mikelove/bioc-refcard
Bioconductor cheat sheet
theislab/zellkonverter
Conversion between scRNA-seq objects
stemangiola/tidybulk
Brings bulk and pseudobulk transcriptomics to the tidyverse
biobakery/Maaslin2
MaAsLin2: Microbiome Multivariate Association with Linear Models
tidyomics/plyranges
A grammar of genomic data transformation
Bioconductor/Contributions
Contribute Packages to Bioconductor
waldronlab/curatedMetagenomicData
Curated Metagenomic Data of the Human Microbiome
theislab/anndata2ri
Convert between AnnData and SingleCellExperiment
thelovelab/tximport
Transcript quantification import for modular pipelines
Bioconductor/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
lgatto/MSnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
mhahsler/rBLAST
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
microbiome/OMA
Orchestrating Microbiome Analysis
LieberInstitute/spatialLIBD
Code for the spatialLIBD R/Bioconductor package and shiny app
seandavi/GEOquery
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
pachterlab/voyager
From geospatial to spatial -omics
lgatto/RforProteomics
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
lmweber/OSTA
"Orchestrating Spatial Transcriptomics Analysis with Bioconductor" book
cmap/cmapR
Tools for manipulating annotated data matrices
Bioconductor/GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
Bioconductor/bioconductor_docker
Docker Containers for Bioconductor
neurogenomics/rworkflows
Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.
teunbrand/ggnomics
A small project to add ggplot2 extensions
federicomarini/GeneTonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
drisso/SingleCellExperiment
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
waldronlab/MultiAssayExperiment
Bioconductor package for management of multi-assay data
saezlab/mistyR
Multiview Intercellular SpaTial modeling framework