biofilm

Russel88/RCon3D

3D Analysis of confocal images of microbial biofilms/communities

markowkes/Biofilm.jl

This package models the dynamics of a biofilm using the Julia programming language.

jkglasbrenner/biofilm-simulation

2D biofilm simulation based on the implementation outlined in Introduction to Computational Science by Angela and George Shiflet.

hancockinformatics/ABCindex

A web app to calculate Anti-Biofilm Combination Index (ABCI)

cohenoa/An-Open-Source-Computational-Tool-for-Measuring-Bacterial-Biofilm-Morphology-and-Growth-Kinetics

Code to accompany the paper: ”An Open-Source Computational Tool for Measuring Bacterial Biofilm Morphology and Growth Kinetics upon One-Sided Exposure to an Anti-Microbial Source”

fatihguelec/Stochastic-Modeling-of-Biofilm-Formation-with-Bacterial-Quorum-Sensing

This repository contains codes developed in 2022 to simulate the biofilm formation with the proposed stochastic model based on quorum sensing and chemical reactions.

pbravoc/vertical_growth_biofilms

This is all the code utilized in the analysis for "Vertical growth dynamics of biofilms".

akshayparopkari/discover_tfbs

Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.

Biofilm-Project/BAS

Biofilm Analyzing Software (BAS)

matteomasi/biofilter-model

1D reactive–transport model of botanical biofiltration of VOCs

NeuroBox3D/ProMeshScripts

Scripts for ProMesh

pommevilla/sbfp

raphaelrubrice/Biofilm-Simulator

Project aimed at programming an individual based model (cellular automaton approach) for modeling bacterial biofilms and interactions within them.