bioformats

There are 8 repositories under bioformats topic.

andreped/vsi2tif
Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF
Language:Jupyter Notebook11 3 45
nf-core/mcmicro
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
Language:Nextflow7 149 2813
Silver-Fang/Image5D
5D图像读写库，全网最快第三方OIR读入器
Language:C++6 2 41
Cytomine-ULiege/Cytomine-BioFormats
A BioFormats wrapper for Cytomine PIMS
Language:Groovy1 5 35
yfukai/pycziutils
A tiny utility module to parse Zeiss CZI files in Python through python-bioformats.
Language:Python1 1 40
bwmr/vsi2tif
Take Olympus vsi stacks. Bleach-correct, write out ome-tiff. Save clicks.
Language:Python0 1 00
tlambert03/bioformats_jar
(deprecated) meta-package to import bioformats_jar from scyjava
Language:Python0 5 30
Cytomine-ULiege/pims-plugin-format-bioformats
Language:Python4 33