bioinformatics-data
There are 43 repositories under bioinformatics-data topic.
nicgirault/circosJS
d3 library to build circular graphs
kmhernan/awesome-bioinformatics-formats
Curated list of bioinformatics formats and publications
MultiQC/test-data
Test data for MultiQC.
jithin8mathew/Protein-feature-extraction
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
nilesh-tawari/ChronQC
Manuscript describing ChronQC is now available online in Bioinformatics
genouest/biomaj
BioMAJ
BioJulia/ReadDatastores.jl
Datastores for reads, not your papa's FASTQ files.
cancervariants/therapy-normalization
Services and guidelines for normalizing drug and other therapy terms
BD2KGenomics/bioapi-examples
Code examples for working with web based bioinformatics APIs
Bio2Byte/public_notebooks
Repository of Jupyter Notebooks created by the Bio2Byte group
maitreyeepaliwal/Alleropedia-Database-for-Allergens
Metadetabase of 13145 records generated for Allergens with a tabular view of the data. Web interface connected to ease the use, analysis and extraction of data with several added functionalities. Tutorial section added to educate the users of the interface design and features and the database.
BioAnalyticResource/ePlant_Plant_eFP
A data visualization tool to display tissue expression data for Arabidopsis thaliana
emir-munoz/adr-prediction
Supplemental material for the paper "Facilitating Prediction of Adverse Drug Reactions by Using Knowledge Graphs and Multi-Label Learning Models".
FatemehGholamzadeh/BWT-on-Gene-Sequence
implementation of Burrows–Wheeler transform on a Gene Sequence - Bioinformatics Course - Fall 2019
biowdl/biowdl-test-data
Reproducible and reusable test data for bioinformatics projects.
fg6/YeastStrainsStudy
Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.
gkoulouras/seq-sec-ratio
A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
FabianJetzinger/sort_gtf
Shell script to sort .gtf files
JFresnedo/AmpSeq
A framework for semi-automated analysis of Amplicon Sequencing data
karthiksoman/biomixQA
Repository for BiomixQA benchmark dataset
bioinfweb/JPhyloIO
A Java library for event-based reading and writing of different phylogenetic file formats through a common interface
ggirelli/bioTrackBinner
Binning biological data tracks and producing RDS containing data.tables
gpiemont/pyeutils
Python interface to NCBI Eutils
hannahvoelker/Microbiome-graph
Produces a network of given microbiome data
Nekose/ICAP_Crawler
A web crawler which scrapes https://anapatterns.org. Visits each of the IC pattern pages, and collects the related antigens.
codecreatede/genomeassembly-pacbiohifi
PacbioHifi genome assembly benchmarks
HuntsmanCancerInstitute/SBApps
Tools for working with the Seven Bridges bioinformatics platform.
mansikath/Fasta-to-Genbank-Converter
A simple Python script using Biopython to convert FASTA files to GenBank format. The script prompts the user for input and output filenames, along with the molecule type (default is DNA). Ensure accurate and annotated GenBank files for your biological sequence data.
V-Z/hybseq-course
Materials for course about processing HybSeq data on computing grids
akshayparopkari/shell-genomics
Covers the following bash commands cat, chmod, cd, cp, curl, head, history, ls, less, man, mkdir, mv, nano, pwd, rm, tail, wc, wget
codecreatede/BIGG-metabolic-analyzer-API
a API to BIGG metabolic databases
codecreatede/pangenome-genome-assembly
bash based pangenome assembly from short and long reads
gabywald/PhyloGenetik
An old Phylogenetik Project (2007) in JAVA, with (some) phylogeny, bioinformatics algorithms, matrix implementations and comparisons, PAM and BLOSUM (extract from http://gabriel.chandesris.free.fr/projets/Phylogenetik/ )
illusionic/Protein-protein-Interaction_Classification
A python solution towards classifying different protein-protein interactions among Protein Sequences.
sensodevices/motor-skills-rehab-research-kit
Contains a sample dataset with rehab sessions of stroke victims and data preparation example