bioinformatics-data
There are 42 repositories under bioinformatics-data topic.
nicgirault/circosJS
d3 library to build circular graphs
kmhernan/awesome-bioinformatics-formats
Curated list of bioinformatics formats and publications
mhtjsh/Bioinformatics_Algorithms
I am sharing my code repository to understand the working and principle of working of various BioInformatics code in Python
MultiQC/test-data
Test data for MultiQC.
jithin8mathew/Protein-feature-extraction
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
nilesh-tawari/ChronQC
Manuscript describing ChronQC is now available online in Bioinformatics
genouest/biomaj
BioMAJ
cancervariants/therapy-normalization
Services and guidelines for normalizing drug and other therapy terms
BioJulia/ReadDatastores.jl
Datastores for reads, not your papa's FASTQ files.
BD2KGenomics/bioapi-examples
Code examples for working with web based bioinformatics APIs
Bio2Byte/public_notebooks
Repository of Jupyter Notebooks created by the Bio2Byte group
maitreyeepaliwal/Alleropedia-Database-for-Allergens
Metadetabase of 13145 records generated for Allergens with a tabular view of the data. Web interface connected to ease the use, analysis and extraction of data with several added functionalities. Tutorial section added to educate the users of the interface design and features and the database.
BioAnalyticResource/ePlant_Plant_eFP
A data visualization tool to display tissue expression data for Arabidopsis thaliana
emir-munoz/adr-prediction
Supplemental material for the paper "Facilitating Prediction of Adverse Drug Reactions by Using Knowledge Graphs and Multi-Label Learning Models".
FatemehGholamzadeh/BWT-on-Gene-Sequence
implementation of Burrows–Wheeler transform on a Gene Sequence - Bioinformatics Course - Fall 2019
biowdl/biowdl-test-data
Reproducible and reusable test data for bioinformatics projects.
fg6/YeastStrainsStudy
Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.
gkoulouras/seq-sec-ratio
A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
karthiksoman/biomixQA
Repository for BiomixQA benchmark dataset
FabianJetzinger/sort_gtf
Shell script to sort .gtf files
JFresnedo/AmpSeq
A framework for semi-automated analysis of Amplicon Sequencing data
bioinfweb/JPhyloIO
A Java library for event-based reading and writing of different phylogenetic file formats through a common interface
ggirelli/bioTrackBinner
Binning biological data tracks and producing RDS containing data.tables
gpiemont/pyeutils
Python interface to NCBI Eutils
hannahpersampieri/Microbiome-graph
Produces a network of given microbiome data
mikeph52/GC-Genie
GC-Genie is a GC percentage calculator written in C++.
Nekose/ICAP_Crawler
A web crawler which scrapes https://anapatterns.org. Visits each of the IC pattern pages, and collects the related antigens.
HuntsmanCancerInstitute/SBApps
Tools for working with the Seven Bridges bioinformatics platform.
V-Z/hybseq-course
Materials for course about processing HybSeq data on computing grids
akshayparopkari/shell-genomics
Covers the following bash commands cat, chmod, cd, cp, curl, head, history, ls, less, man, mkdir, mv, nano, pwd, rm, tail, wc, wget
david4096/sheepdog-exporter
Export metadata from the DCP sheepdog API. 🐑🐑
gabywald/PhyloGenetik
An old Phylogenetik Project (2007) in JAVA, with (some) phylogeny, bioinformatics algorithms, matrix implementations and comparisons, PAM and BLOSUM (extract from http://gabriel.chandesris.free.fr/projets/Phylogenetik/ )
genomicssport/genomeassembly-pacbiohifi
pacbioHifi genome assembly benchmarks
illusionic/Protein-protein-Interaction_Classification
A python solution towards classifying different protein-protein interactions among Protein Sequences.
sensodevices/motor-skills-rehab-research-kit
Contains a sample dataset with rehab sessions of stroke victims and data preparation example