biomarkers
There are 83 repositories under biomarkers topic.
markwk/awesome-biomarkers
Curated List of Biomarkers, Blood Tests, and Blood Tracking
genular/pandora
PANDORA :computer:
ai-med/quickNAT_pytorch
PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
rsinghlab/pyaging
A Python-based compendium of GPU-optimized aging clocks.
mad-lab-fau/BioPsyKit
A Python package for the analysis of biopsychological data.
darya-chyzhyk/confound_prediction
Confound-isolating cross-validation approach to control for a confounding effect in a predictive model.
kstawiski/OmicSelector
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
KibromBerihu/ai4elife
This data-centric AI repository implements a robust deep learning method (LFBNet) for fully automated tumor segmentation in whole-body [18]F-FDG PET/CT images.
eminSerin/NBS-Predict
A prediction-based extension of network-based statistics.
NCBI-Hackathons/MR_BACOn
Mendelian Randomization with Biomarker Associations for Causality with Outcomes
ComputationalAgingLab/ComputAge
A library for full-stack aging clocks design and benchmarking.
jakelever/civicmine
Text mining cancer biomarkers for the CIVIC database
pcastellanoescuder/FoodBiomarkerOntology
:rocket: Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology
xinglab-ai/genomap
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
caranathunge/promor
A comprehensive R package for label-free proteomics data analysis and modeling
wejlab/TBSignatureProfiler
Profile RNA-seq data using published TB gene signatures
shedding-hub/shedding-hub
Data and statistical models for biomarker shedding.
jbpauly/fasting
A Python package to interact with fasting logs from apps like Zero.
mathcom/G2Vec
G2Vec: Distributed gene representations for identification of cancer prognostic genes (Scientific Reports)
DanieleBizzarri/MiMIR
This package contains a Rshiny webtool developed to allow the calculation of the metabolic predictors developed by the groups of MOLEPI and LCBC (LUMC), from raw Nightingale Health 1H-NMR metabolomics data.
deeplearner0731/BioPred
R package BioPred
raamana/hiwenet
Histogram-weighted Networks for Connectivity & Advanced Analysis in Neuroscience
singha53-zz/omicsBioAnalytics
Omics BioAnalytics - RShiny web app for bioinformatics analyses
Srizon143005/PancreaticCancerBiomarkers
Pancreatic Cancer Biomarkers Identification Codes & Files
tarolangner/mri-biometry
Neural Networks for Deep Regression on UK Biobank neck-to-knee body MRI
ZihengZZH/survival-analysis
discovering novel biomarkers in RNA-Seq data with tree-based models and survival analysis
CostaLab/CimpleG
CimpleG, an R package to find (small) CpG signatures.
SACEMA/inctools
Incidence Estimation Tools
utshabkg/lung_cancer_biomarker
Bioinformatics Project. Trying to find out the most influential metabolomic biomarkers(from 158) for predicting Lung Cancer. Also, trying to make some predictions about the disease.
crb479/mcdevitt-trauma-ml
This repository contains the scripts for the ML-Trauma project of the McDevitt Lab at NYU.
insightsengineering/uniCATE
Univariate conditional average treatment effect estimation for predictive biomarker discovery
idssplab/overall_survival_nsclc
bimodal DNN for NSCLC patient overall survival prediction
KonstantinBurkin/personalized-medicine
Prognostic ML-models and key-feature extraction for analysis of cardiovascular complications
MaastrichtU-CDS/federated-brain-age
Federated implementation of a CNN to predict brain age from MRI-derived gray matter
SiminaB/DMD-metabolomics
Code for analysis of metabolomics data for DMD natural history study
april-tools/bayesian-hrv
Code for paper "A Bayesian analysis of heart rate variability changes over acute episodes of bipolar disorder".