biomart
There are 13 repositories under biomart topic.
ropensci/biomartr
Genomic Data Retrieval with R
grimbough/biomaRt
R package providing query functionality to BioMart instances like Ensembl
Matthew-Mosior/fasta-region-inspector
A bioinformatics tool for analyzing somatic hypermutation
pasted/clinical_variant_database
Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensembl dataset. Originally developed as part of a Masters in Bioinformatics project @ University of Exeter
robertopreste/apybiomart
Async pythonic interface to Biomart.
stevekm/annotate-peaks
Scripts for .bed file genomic region annotation with various tools
jonathanBieler/BioMart.jl
Make simple requests to Ensembl BioMart database.
ch1ru/genome-lab
A bioinformatics web app for comparative genomics
hexhead/insilico-gene-annotation-app
In silico Lab Shiny App Demo Gene Annotation for a List of RefSNP IDs
jromanowska/ensemblfetchR
R-package: wrapper for {biomaRt} functions
michalbukowski/aml-analysis
A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)
UBC-iGEM/wheat_RNAseq_analysis
Transcriptome Analysis of Heat and Drought-Stressed Wheat
travis-m-blimkie/HumanIDConverter
Shiny app that converts human gene IDs to different types using BioMart data.