bismark
There are 6 repositories under bismark topic.
jlab-code/MethylStar
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
seb-mueller/snakemake-bisulfite
Pipeline for BS-Seq data based on snakemake
lyijin/bismsmark
Uses `snakemake` to run `bismark` in a reproducible pipeline. Can be run locally, or on a cluster running the SLURM scheduler.
superDross/MethyCoverageParser
Produces coverage and methylation percentage data from FASTQ files.
dohlee/snakemake-bismark-methyldackel-sra
Process SRA bisulfite sequencing data easily with Bismark-MethylDackel pipeline.
christacaggiano/snakemake_WGBS
Using Snakemake to implement ENCODE WGBS pipeline