bowtie2
There are 30 repositories under bowtie2 topic.
biowasm/biowasm
WebAssembly modules for genomics
biobakery/kneaddata
Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
StevenWingett/FastQ-Screen
Detecting contamination in NGS data and multi-species analysis
digo4/Clinical-Genomics
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
jlanga/smsk_popoolation
Snakemake pipeline for Popoolation and Popoolation2
Vicky-Hunt-Lab/stepRNA
Align short RNA seqeuncing reads to determine the length of of overhang
iliapopov17/The-shadow-of-HIV
š¦ Research project in Bioinformatics Institute 2023-2024
wzthu/Rbowtie2
Bioconductor package: an R wrapper for Bowtie2 and AdapterRemoval
Juke34/AliNe
Nextflow Alignment Pipeline
lipingfangs/Panlineal
Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.
PriyaLakr/NGS_DataAnalysis
Some scripts to make your bioinformatics analyses reproducible and a bit easy š¤
tiagofilipe12/pATLASflow
A pipeline to run mapping, mash screen and assembly methods for pATLAS.
yejg2017/Sequence-Mapping-Bio
This is a code tutorial for rna or dna sequence mapping by myself-RyanYip
bixBeta/atac
nextflow ATACseq pipeline for GG02
daaaaande/auto_find_circ
automating find_circ
tiagofilipe12/PlasmidCoverage
Script to obtain plasmid id from WGS data using bowtie2 to map
adityamahadevaniyer/Cut-and-Tag
Slurm scripts for analyzing bulk Cutandtag data
anita-brzoza/university_projects
The repository contain directories of projects done during the bioinformatics degree program
mehdimerbah/BW_Seminar
This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.
OrangePomeranian/ChiP-seq
This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.
pmambrose/docker-bowtie2
Bowtie2 v2.5.2 Dockerfile Native for Apple M1+ Silicon (ARM64) and Intel/AMD (x86_64) Containers
tdayris/fair_bowtie2_mapping
Align reads over a reference genome, filter aligned-reads, and mark duplicates
tdayris/fair_macs2_calling
Snakemake workflow used to call peaks with Macs2
adityamahadevaniyer/RNA-seq
RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
mattgalbraith/bowtie2-docker-singularity
Build Docker container for Bowtie 2 and (optionally) convert to Apptainer/Singularity.
metamaden/seq_answers
Sequencing data preprocessing