calcium-imaging-analysis
There are 16 repositories under calcium-imaging-analysis topic.
nel-lab/mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
kushalkolar/MESmerize
Platform for Calcium Imaging analysis. DEPRECATED.
adamshch/GraFT-analysis
This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Time-trace (GraFT) Dictionary Learning, is published in Charles et al. 2022 in the IEEE Transactions of Image Processing.
colleenjg/OpenScope_CA_Analysis
Analysis code for the OpenScope Credit Assignment project.
nel-lab/mesmerize-napari
Mesmerize plugin for the napari viewer
Mishne-Lab/cidan
Calcium Imaging Data ANalysis software
CanYing0913/CalciumZero
Fully automated calcium imaging analysis Workflow
mhmcc/dunnart-neural-activity
Computational analysis of neuronal ensembles and travelling waves in neural activity from the cerebral cortex of the fat-tailed dunnart
MamiyaA/Mamiya_etal_2023_Proprioceptor_selectivity_topographic_maps_Analysis_code
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Nazzari97/Cell-Culture-Calcium-Activity-Identification-During-Wound-Healing
This is MATLAB script created and used via the Trinkaus-Randall Lab at Boston University for the analysis of epithelial cellular calcium signaling during wound healing.
RodrigoSandon/LBGN
Supervisors: Dr. Patrick Piantadosi and Dr. Andrew Holmes
ronihogri/Calcium-signal-preprocessing-and-analysis-with-Spike2
Spike2 script for handling calcium imaging data. The program cleans the data, visualizes it, and extracts features of the detected calcium signals. It creates two output files: a txt file holding the clean data values for all cells, and a csv file containing a summary of the results obtained.
SharifAmit/4SM
[iScience] [Tensorflow] Subcellular Signal Segmenting Spatiotemporal Model.
tele-med/suite2p_matlab
CalciumImaging analysis matlab pipeline for suite2p outputs
tuthill-lab/Mamiya_2023
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
nsourlos/manual_CACS_to_REDCap
Add manual Calcium scores measurements to REDCap