cdna

There are 12 repositories under cdna topic.

nanoporetech/pipeline-transcriptome-de
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
Language:Python106 21 3127
nanoporetech/pychopper
A tool to identify, orient, trim and rescue full length cDNA reads
Language:Python79 23 5722
adnaniazi/tailfindr
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
Language:R53 3 7215
nanoporetech/pinfish
Tools to annotate genomes using long read transcriptomics data
Language:Go45 17 2613
nanoporetech/pipeline-pinfish-analysis
Pipeline for annotating genomes using long read transcriptomics data with pinfish
Language:Python27 19 165
nanoporetech/pipeline-nanopore-denovo-isoforms
Pipeline for de novo clustering of long transcriptomic reads
Language:Python26 21 156
biocorecrg/MOP2
Master of Pores 2
Language:Nextflow22 3 607
GPUOpen-Tools/isa_spec_manager
Utilities for accessing AMD's Machine-Readable GPU ISA Specifications.
Language:C++17 8 02
nanoporetech/isONclust2
A tool for de novo clustering of long transcriptomic reads
Language:C++14 16 73
nanoporetech/hammerpede
A package for training strand-specific profile HMMs for primer sets from real Nanopore data
Language:Python5 18 43
nanoporetech/pipeline-pychopper
Utility pipeline for running pychopper, a tool to identify full length cDNA reads
Language:Python3 15 0
BADDxmu/IncDNA
0 0 01