celltype-annotation

There are 7 repositories under celltype-annotation topic.

  • scPRINT

    cantinilab/scPRINT

    single cell foundation model for Gene network inference and more

    Language:Jupyter Notebook571146

  • FelixTheStudent/cellpypes

    Cell type pipes for R

    Language:R511213
  • ELeFHAnt

    praneet1988/ELeFHAnt

    Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classifiers 1) RF 2) SVM and 3) LR

    Language:R21357
  • Cellcano

    marvinquiet/Cellcano

    Supervised cell type identification for scATAC-seq data

    Language:Python133112

  • ScialdoneLab/CIARA_python

    Implementation of entropy of mixing algorithm in python

    Language:Jupyter Notebook8111

  • shahrozeabbas/fsctype

    Modification of the Original ScType Method for Barcode Annotation using KNN Algorithm

    Language:R0100

  • MohamedOmar2020/QuPath_scripts

    Custom groovy scripts for QuaPath

    Language:Groovy10