chado
There are 20 repositories under chado topic.
tripal/tripal
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
lmb-embrapa/machado
This repository provides users with a framework to store, search and visualize biological data.
GMOD/docker-apollo
:whale: Apollo 2.X Docker Image
galaxy-genome-annotation/dockerized-gmod-deployment
:whale::bar_chart::books: Galaxy + Apollo + Chado + Tripal + JBrowse + JBrowse REST API + PostGraphQL + JBrowse GraphQL Experiment all as a docker-compose.yml
tripal/tripal_analysis_expression
Extension module for the Tripal toolset to show differential expression data. This module was made for Drupal 7, Tripal 3, and Chado 1.3.
galaxy-genome-annotation/chado-schema-builder
compiles copies of the Chado database and dumps the SQL for use in other tools.
ropensci-archive/rflybase
:no_entry: ARCHIVED :no_entry: Interface to 'FlyBase'
statonlab/docker-containers
Offers 3 different flavors of docker containers that can be built upon to deploy Drupal and Tripal sites.
statonlab/tripal_alchemist
entity converter for tripal 3
COMBAT-TB/combattbmodel
COMBAT-TB model is a Chado inspired graph model for genome annotation.
tripal/chado_search
Mainlab Chado Search: enabling advanced search function for a Tripal/Chado database
tripal/mainlab_chado_loader
Mainlab Chado Loader
tripal/tripal_genetic
Extends core Tripal with support focused on genotypic data, genetic markers, sequence variants, etc.
UofS-Pulse-Binfo/genotypes_loader
A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.
jcvi-plant-genomics/medicago-tripal
Drupal/Tripal code for the MedicagoGenome.org site (MTGD)
EvanCarroll/mumine
Work pertaining to import and analytics of unknown data source (mass spec), example of Chado integration
JazzEd-EdTech/biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
statonlab/tripal_dev_seed
A minified bioinformatics dataset for seeding Tripal sites