chemical-master-equation

There are 12 repositories under chemical-master-equation topic.

  • voduchuy/NumCME.jl

    Direct solution of the Chemical Master Equation in Julia.

    Language:Julia8202

  • ankitgupta83/DeepCME

    A deep learning framework for solving the Chemical Master Equation

    Language:Python6101

  • voduchuy/pypacmensl

    Python wrapper for PACMENSL.

    Language:Cython3100

  • Mathbiomed/CASTANET

    CASTANET: Computational package for deriving Analytical STAtionary distributions of biochemical reaction networks with NEtwork Translation.

    Language:MATLAB1200

  • voduchuy/pacmensl

    Library for parallel direct solution of the Chemical Master Equation (CME).

    Language:C++1400

  • voduchuy/StMcmcCme

    This repository contains the Python modules and scripts to reproduce the results in the paper "Catanach, Vo, Munsky. IJUQ 2020."

    Language:Jupyter Notebook1300

  • locuoco/stochastic-chemical-kinetics

    Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics

    Language:C++0100

  • ManuelaCarriero/PyExTra

    Implementation of algorithms for simulating gene expression and translation in order to investigate about NF-kB model in colon cancer cells.

    Language:TeX0300

  • voduchuy/CudaFsp

    CUDA-based implementation of the Finite State Projection (FSP) algorithm.

    Language:Cuda0100

  • MunskyGroup/Vo_et_al_2023_Matlab

    Matlab codes for analyzing and designing single-cell experiments.

    Language:MATLAB20

  • voduchuy/KrylovFspSsa

    Fortran implementation of the Krylov-FSP-SSA algorithm for solving the Chemical Master Equation.

    Language:Fortran10

  • voduchuy/Vo_2019_ADAMHFSP

    Code to reproduce the numerical results in the manuscript, "Bayesian estimation of stochastic gene expression using multifidelity models "Huy D. Vo*, Zachary R. Fox, Ania A. Baetica, Brian E. Munsky.

    Language:MATLAB00