chia-pet

There are 13 repositories under chia-pet topic.

YaqiangCao/cLoops
Accurate and flexible loops calling tool for 3D genomic data.
Language:Python109 15 2918
YaqiangCao/cLoops2
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
Language:Python42 3 117
billgreenwald/pgltools
Paired Genomic Loci Tool Suite
Language:Python28 2 164
sirusb/R3CPET
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
Language:R4 3 01
kkrismer/idr2d
Irreproducible discovery rate for genomic interaction data
Language:R3 2 03
jhammelman/spatzie
Identification of enriched motif pairs from chromatin interaction data
Language:R2 3 13
LTLA/archive-InteractionSet
An archived version of the InteractionSet repository, see https://github.com/LTLA/InteractionSet for the active version.
Language:R2 8 132
4DNucleome/tad_compare
Compare different sets of TADs inferred from Hi-C data (or other 3C technique) using different methods.
Language:Python1 5 12
gifford-lab/spatzie
Identification of enriched motif pairs from chromatin interaction data
Language:R1 1 0
nlawlor/Multiomic_Browser
An R shiny application for visualization of EndoC-bH1 and human islet genomic data
Language:R1 2 01
younglab/origami
Statistical Modeling of ChIA-PET interactions
Language:Shell1 7 84
LTLA/BiocISet2016
Technical note for the InteractionSet package
Language:TeX3 0
LTLA/dacpet
An R package for ChIA-PET data analysis
Language:R3 0