chip-seq-analysis
There are 14 repositories under chip-seq-analysis topic.
adeschen/consensusSeekeR
This R package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region. Tested on ChIP-Seq peaks and nucleosome positions.
GeoRouv/chip-seq-analysis-replication
🔬 A replication of ChiP-Seq analysis from an experiment regarding gene induction and repression during terminal erythropoiesis that are mediated by distinct epigenetic changes
pmb59/KLTepigenome
Uncovering correlated variability in epigenomic datasets using the Karhunen-Loeve Transform
ecianini/ENCODE_ChIP-seq_analysis
Project for the Epigenomics course of Bioinformatics for Computational Genomics MSc
OrangePomeranian/ChiP-seq
This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.
parthian-sterlet/antinoise
Extraction of genomic background set of DNA sequences for a given foreground set of sequences for subsequent de novo motif discovery
sbresnahan/IGC-CD-SM
Supplementary Materials for "Intragenomic conflict underlies extreme phenotypic plasticity in queen-worker caste determination in honey bees (Apis mellifera)"
sebastian-gregoricchio/ChIP_Zwart
ChIP-seq pipeline specific for the Zwart lab
sebastian-gregoricchio/SPACCa
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
StathopoulosLab/Stathopoulos_Lab_Pipelines
A comprehensive source for Stathopoulos lab code generated and used in data analysis.
beatrizmclm/9.ChIP-seq_Analysis
ChIP-seq combines chromatin immunoprecipitation (ChIP) with massively parallel DNA sequencing to identify the binding sites of DNA-associated proteins.
marcopann/chip-seq_workflow
This repository contains my own ChIP-seq analysis workflow, which I have been using so far during my PhD project.
pmb59/endoderm
Definitive endoderm differentiation of human ESCs in G1 phase of the cell cycle
sivkri/Schizosaccharomyces-pombe-Chip-seq-analysis
After getting the bed file from the Peak calling, we can annotate and create all downstream analysis of two sets of data