chromatin

There are 48 repositories under chromatin topic.

AndreaMariani-AM/ChIPseq_snakemake
ChIPseq pipeline for Pasini's lab written in snakemake
Language:Python0 1 00
bchan-4/LE_single_chain
Code to model active loop extrusion on chromatin using hybrid MD-MC.
Language:C0 1 00
benja0x40/MRA.TA
Multi Resolution Analysis of Tiling Arrays. (R package)
Language:R0 2 00
benja0x40/Tightrope
ChIP-seq normalization according to background reads density. (R package)
Language:R0 2 10
eguarnera/ChromaSEP
ChromaSEP
Language:Python0 0 00
eguarnera/ChromaWalker
ChromaWalker
Language:Python0 0 00
Picani/phyloHiC
Make a phylogeny using the chromatin structure information extracted from Hi-C experiments (mirror of the original repo)
Language:Python0 1 00
sebastian-gregoricchio/ChIP_Zwart
ChIP-seq pipeline specific for the Zwart lab
Language:Python0 2 00
4dn-hack-team9-2024/hoomd_scripts
Benchmarking simulation frameworks for chromatin folding. (https://resgen.io/l/?d=IBvynlJsQ5qMAvSa9JP3XQ)
Language:Jupyter Notebook
aryeelab/diffloop-paper
Sample Analysis for diffloop paper
Language:HTML4 3
Marco-Mendivil-Carboni/TFM
Chromatin simulation program written in cuda.
Language:TeX
qwx9/chrab
chromatin a/b profile prediction based on element counts
Language:R