clinical-data

There are 128 repositories under clinical-data topic.

  • PyHealth

    sunlabuiuc/PyHealth

    A Deep Learning Python Toolkit for Healthcare Applications.

    Language:Python9083236192

  • YerevaNN/mimic3-benchmarks

    Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.

    Language:Python78339115323

  • NYUMedML/DeepEHR

    Chronic Disease Prediction Using Medical Notes

    Language:Python26024371

  • cqframework/clinical_quality_language

    Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.

    Language:Java25053832120

  • ehrbase/ehrbase

    An open source openEHR server

    Language:Java2222136390

  • ppazos/cabolabs-ehrserver

    Open platform to manage and share standardized clinical data, designed by @ppazos at CaboLabs Health Informatics.

    Language:Groovy171391.1k107

  • clips/clicr

    Machine reading comprehension on clinical case reports

    Language:Python14515339

  • genular/pandora

    PANDORA - Predictive Analytics aNd Data Oriented Research Applications :computer:

    Language:Vue133112321

  • NYUMedML/CNN_design_for_AD

    Code for "Generalizable deep learning model for early Alzheimer’s disease detection from structural MRIs"

    Language:Jupyter Notebook13212435

  • futianfan/clinical-trial-outcome-prediction

    benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.

    Language:Python9421221

  • Oulu-IMEDS/OAProgression

    Multimodal Machine Learning-based Knee Osteoarthritis Progression Prediction from Plain Radiographs and Clinical Data

    Language:Python7411318

  • VectorInstitute/cyclops

    Toolkit for evaluating and monitoring AI models in clinical settings

    Language:Python677379

  • rfhb/ctrdata

    Aggregate and analyse information on clinical trials from public registers

    Language:R416385

  • yao8839836/CEMRClass

    Traditional Chinese Medicine Clinical Records Classification. In BIBM 2016

    Language:Java383021

  • aphp/Cohort360

    A web application to find patients, build cohorts and visualize health records

    Language:TypeScript377510

  • rvandewater/YAIB

    🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

    Language:Python344716

  • berkanlafci/oadat

    OADAT: Experimental and Synthetic Clinical Optoacoustic Data for Standardized Image Processing

    Language:Python31213

  • AI-in-Health/Patient-Instructions

    Code for "Retrieve, Reason, and Refine: Generating Accurate and Faithful Discharge/Patient Instructions" (NeurIPS 2022)

    Language:Jupyter Notebook26315

  • CogStack/MedCATtutorials

    General tutorials for the setup and use of MedCAT.

    Language:HTML249315

  • TeamHeka/medkit

    This repository is now archived. Further development has been moved to https://github.com/medkit-lib/medkit.

    Language:Python23872

  • XanderJC/medkit-learn

    The Medkit-Learn(ing) Environment: Medical Decision Modelling through Simulation (NeurIPS 2021) by Alex J. Chan, Ioana Bica, Alihan Huyuk, Daniel Jarrett, and Mihaela van der Schaar.

    Language:Python23311
  • ICD_GEMs.jl

    JuliaHealth/ICD_GEMs.jl

    ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).

    Language:Julia16223

  • thbuerg/MetabolomicsCommonDiseases

    ⛑ Code for "Metabolomic profiles predict individual multi-disease outcomes" ⛑

    Language:Jupyter Notebook16111

  • Roni-Lab/PPSNet

    PPSNet: Leveraging Near-Field Lighting for Monocular Depth Estimation from Endoscopy Videos (arXiv, 2024)

    Language:Python13532

  • levrex/DiagnosisExtraction_ML

    Pipeline for building Machine Learning Classifiers for the diagnosis of EHR text-data. We used this pipeline for our study, published here: https://doi.org/10.2196/23930.

    Language:Jupyter Notebook11356

  • acampillos/sepsis-prediction

    Early prediction of sepsis with gradient boosting (XGBoost) and deep learning (LSTM and GRU) using MIMIC-III data.

    Language:Jupyter Notebook9101

  • curedao/health-reference-data

    Standard health reference databases including units of measurement, biomarkers, medical codes, medications, side-effects, supplements, foods, ingredients, and more.

    Language:HTML9217

  • fr4j4/ClinicaRamis

    Plataforma web clínica dental

    Language:PHP9404

  • joanacmbarros/analysis-results-data-model

    Data analysis produces data in the form of results. Although integrating and putting findings into context is a cornerstone of scientific work, data of this type is often neglected. The analysis results data model is a proposed solution to this issue that combines analysis standards with a common data model.

    Language:R8351

  • lindvalllab/MLSym

    Deep learning for cancer symptoms monitoring on the basis of EHR unstructured clinical notes

    Language:Python7006

  • NCATS-Tangerine/tranql

    A Translator Query Language

    Language:Python73676

  • vincenzorusso3/mimic-iv-benchmarks

    FDSML Course Project 2020/21

    Language:Python7105

  • csinva/clinical-rule-analysis

    Analyzing clinical decision instruments through the lens of data and large language models.

    Language:Jupyter Notebook620

  • derekmma/DICE

    [ACL'23 main] DICE: Data-Efficient Clinical Event Extraction with Generative Models

    6330
  • AnnoDash

    justin13601/AnnoDash

    A clinical terminology annotation dashboard created using Plotly Dash & the MIMIC-IV database.

    Language:Python6373

  • linhaowei1/GDCurer

    ❤️ GDCurer: An AI-assisted Drug Dosage Prediction System for Graves' Disease

    Language:JavaScript6100