clonal-evolution

There are 9 repositories under clonal-evolution topic.

  • AntonioDeFalco/SCEVAN

    R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

    Language:HTML90412325

  • caravagnalab/ctree

    Clone trees for Cancer Evolution studies from bulk sequencing data.

    Language:R5322

  • phipsonlab/NextClone

    Nextflow pipeline for extracting and counting clonal barcodes

    Language:Python4243

  • iamfuxiao/tumour-growth-patterns-impact-evolution

    Agent-based modelling reveals the impact of growth patterns on spatial and temporal features of clonal diversification. A GitHub repository of the Source Code for the model and Source Data for the figures of the paper.

    Language:Jupyter Notebook2102

  • caravagnalab/lineaGT

    Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations

    Language:R130

  • FrancisCrickInstitute/tumour-growth-patterns-impact-evolution

    Agent-based modelling reveals the impact of growth patterns on spatial and temporal features of clonal diversification. A GitHub repository of the Source Code for the model and Source Data for the figures of the paper.

    Language:Cuda1302

  • caravagn/GBM-Stat-testing

    Statistical testing for GBM Margin/ Primary tumours

    Language:R20

  • ccbio/slcust

    Inference of subclonal populations in cancer genomes using smoothing splines

    20

  • phipsonlab/CloneDetective

    R Package for interrogating clonal data

    Language:R211