co1
There are 8 repositories under co1 topic.
nextgenusfs/amptk
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
terrimporter/CO1Classifier
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
terrimporter/COI_NCBI_2018
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
Hajibabaei-Lab/HajibabaeiEtAl2019
Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."
Hajibabaei-Lab/SCVUC_COI_metabarcode_pipeline
Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes
EcoBiomics-Zoobiome/SCVUC_COI_metabarcode_pipeline
Data flow to process COI metabarcodes
Hajibabaei-Lab/CO1testing
COI sequences files used to test the COI Classifier Web Portal
Hajibabaei-Lab/HajibabaeiEtAl2019b_benthos_vs_water
Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."